New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5243293	36 (1.140)	3 (0.100)	3/232	NT	8.6%	coding (1237/1302 nt)	hmgA	homogentisate 1,2‑dioxygenase
	?	NC_002947	= 5243311	30 (1.010)					coding (1219/1302 nt)	hmgA	homogentisate 1,2‑dioxygenase

GATGCCCAATGGCAGGTTCTGCAGGGGGAAGTCGCTGTGCCCGTTGGCGTGCTCGACCCAGCTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5243138‑5243293 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgcaaGCCCTTGAATGCCCGCAATTGCAGGCCGACTACGATAGTTGCTG  <  NC_002947/5243311‑5243268                                                                                                                                                                                                          GATGCCCAATGGCAGGTTCTGCAGGGGGAAGTCGCTGTGCCCGTTGGCGTGCTCGACCCAGCTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGC                                                    <  1:284095/150‑1                                                   GCTCGACCCAGCTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAAGCCCTTGAATGCCCGCAATTGCAGGCCGACTACGATAGTTGCTG  <  1:284317/150‑1                                                                                                                   GCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAAGCCCTTGAATGCCCGCAATTGCAGGCCGACTACGA           >  1:496513/1‑77                                                                                                                   GCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAAGCCCTTGAATGCCCGCAATTGCAGGCCGACTACGA           <  2:496513/77‑1                                                                                                                                                                                                          GATGCCCAATGGCAGGTTCTGCAGGGGGAAGTCGCTGTGCCCGTTGGCGTGCTCGACCCAGCTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5243138‑5243293 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgcaaGCCCTTGAATGCCCGCAATTGCAGGCCGACTACGATAGTTGCTG  <  NC_002947/5243311‑5243268

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.