New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5696404	26 (0.820)	3 (0.100)	3/238	NT	9.7%	coding (1072/1272 nt)	pyrC'	dihydroorotase‑like protein
	?	NC_002947	= 5696426	31 (1.020)					coding (1094/1272 nt)	pyrC'	dihydroorotase‑like protein

AGCCGCACGAGCGCGACGCCAAGCTGGCCCCGTTCGGCGCCACCGAGCCGGGTATCAGCAGCGTCGAGTTGCTGCTGCCACTGGCCATGACCCTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5696255‑5696404 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgg‑ccGGCAGGCGCAGGGCGGCAGCCGGGCCGCTGCTCAGGCGGGCCAGCAAGGTCGGCAGGTCGAGCAGGCCGTCCTGCACCAGGGTCATGGCCAGTGGCAGCAGCAACTCGACGCTGCTGATACCCGGCTCGGTGG  <  NC_002947/5696426‑5696294                                                                                                                                                                                                                                                                                              AGCCGCACGAGCGCGACGCCAAGCTGGCCCCGTTCGGCGCCACCGAGCCGGGTATCAGCAGCGTCGAGTTGCTGCTGCCACTGGCCATGACCCTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CC                                                                                                                                       >  1:722480/1‑150                                                                                                       ACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCGGCAGGCGCAGGGCGGCAGCCGGGC                                                                                                              <  1:155453/73‑1                                                                                                       ACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCGGCAGGCGCAGGGCGGCAGCCGGGC                                                                                                              >  2:155453/1‑73                                                                                                                                      CCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCC‑GGCCGCTGCTCAGGCGGGCCAGCAAGGTCGGCAGGTCGAGCAGGCCGTCCTGCACCAGGGTCATGGCCAGTGGCAGCAGCAACTCGACGCTGCTGATACCCGGCTCGGTGG  >  1:448759/1‑150                                                                                                                                                                                                                                                                                              AGCCGCACGAGCGCGACGCCAAGCTGGCCCCGTTCGGCGCCACCGAGCCGGGTATCAGCAGCGTCGAGTTGCTGCTGCCACTGGCCATGACCCTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5696255‑5696404 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgg‑ccGGCAGGCGCAGGGCGGCAGCCGGGCCGCTGCTCAGGCGGGCCAGCAAGGTCGGCAGGTCGAGCAGGCCGTCCTGCACCAGGGTCATGGCCAGTGGCAGCAGCAACTCGACGCTGCTGATACCCGGCTCGGTGG  <  NC_002947/5696426‑5696294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.