New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 342930 = | 43 (1.360) | 3 (0.100) | 3/232 | NT | 7.4% | intergenic (+58/+74) | gabP‑I/PP_5439 | gamma‑aminobutyrate permease/hypothetical protein |
? | NC_002947 | 342979 = | 35 (1.180) | intergenic (+107/+25) | gabP‑I/PP_5439 | gamma‑aminobutyrate permease/hypothetical protein |
CTGCGCTGCTGAGTATTGGTGTGGTGGCGGCTGGCTTGCTGGTGCACC‑GCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTCCTGGAA > NC_002947/342784‑343075 | tggatggcgctgacgaagagaccaccatggcctggctggagagtgatgagttccaggacgcctatatcgccgcttccgaactggtggccaagcagcagcaacagcagaagcagttcggctgacagggccatataacccgctcctacgGGc < 2:501643‑M1/3‑1 (MQ=255) cTGCGCTGCTGAGTATTGGTGTGGTGGCGGCTGGCTTGCTGGTGCACC‑GCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGcc > 1:231836/1‑150 (MQ=255) tGCGCTGCTGAGTATTGGTGTGGTGGCGGCTGGCTTGCTGGTGCACC‑GCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCt < 2:143256/150‑1 (MQ=255) tGCGCTGCTGAGTATTGGTGTGGTGGCGGCTGGCTTGCTGGTGCACC‑GCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCt < 1:482493/150‑1 (MQ=255) tGCGCTGCTGAGTATTGGTGTGGTGGCGGCTGGCTTGCTGGTGCACC‑GCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCt < 2:444389/150‑1 (MQ=255) tGCGCTGCTGAGTATTGGTGTGGTGGCGGCTGGCTTGCTGGTGCACC‑GCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCt < 2:555485/150‑1 (MQ=255) cgatctgatgCGTATTGTGCTGGTGGCGGCTGGCTTGCTGGTGCACC‑GCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCt < 2:239338/146‑1 (MQ=255) tggcgctgacgaagagaccaccatggcctggctggagagtgatgagttccaggacgcctatatcgccgcttccgaactggtggccaagcagcagcaacagcagaagcagttcggctgacagggccatataacccgctcctacgGGCCtgt < 1:286254‑M1/7‑1 (MQ=255) ggcgctgacgaagagaccaccatggcctggctggagagtgatgagttccaggacgcctatatcgccgcttccgaactggtggccaagcagcagcaacagcagaagcagttcggctgacagggccatataacccgctcctacgGGCCtgtg > 2:245961‑M1/143‑150 (MQ=255) ctgAGTATTGGTGTGGTGGCGGCTGGCTTGCTGGTGCACC‑GCAAGCGCGAGGCGGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGAGAtcg > 1:239338/1‑148 (MQ=255) tgtggtgGCGGCTGGCTTGCTGGTGCACC‑GCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCgg < 1:306351/150‑1 (MQ=255) gcgctTGC‑GGTGCACCAGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAg > 2:814399/3‑150 (MQ=255) ggctTGCTGGTGCACC‑GCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAgg > 1:462110/1‑150 (MQ=255) ggctTGCTGGTGCACC‑GCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAgg > 1:462171/1‑150 (MQ=255) gctTGCTGGTGCACC‑GCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCtg < 1:245011/119‑1 (MQ=255) gctTGCTGGTGCACC‑GCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCtg > 2:245011/1‑119 (MQ=255) gctTGCTGGTGCACC‑GCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCTTGCCCGcgaaa < 2:231836/150‑5 (MQ=255) ctTGCTGGTGCACC‑GCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCTTGCCCGcgaaag < 1:568837/150‑6 (MQ=255) ttGCTGGTGCACC‑GCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTc < 1:454224/150‑1 (MQ=255) ttgcggTGCACCAGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGCTCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTTTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTc < 1:814399/146‑1 (MQ=255) tggagagtgatgagttccaggacgcctatatcgccgcttccgaactggtggccaagcagcagcaacagcagaagcagttcggctgacagggccatataacccgctcctacgGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTc < 2:625893‑M1/39‑1 (MQ=255) tGGTGCACC‑GCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTcacca < 1:655600/150‑1 (MQ=255) gtgatgagttccaggacgcctatatcgccgcttccgaactggtggccaagcagcagcaacagcagaagcagttcggctgacagggccatataacccgctcctacgGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACcaca > 1:381974‑M1/106‑150 (MQ=255) tgatgagttccaggacgcctatatcgccgcttccgaactggtggccaagcagcagcaacagcagaagcagttcggctgacagggccatataacccgctcctacgGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAg > 1:625893‑M1/105‑150 (MQ=255) cACC‑GCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGc > 2:568040/1‑150 (MQ=255) c‑GCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACcaca < 1:68289/144‑1 (MQ=255) c‑GCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACcaca > 2:68289/1‑144 (MQ=255) ttccaggacgcctatatcgccgcttccgaactggtggccaagcagcagcaacagcagaagcagttcggctgacagggccatataacccgctcctacggg < 2:465490‑M1/2‑1 (MQ=255) ttccaggacgcctatatcgccgcttccgaactggtggccaagcagcagcaacagcagaagcagttcggctgacagggccatataacccgctcctacggg > 1:465490‑M1/98‑99 (MQ=255) cTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTta < 1:68636/150‑1 (MQ=255) gCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGc > 2:3568/1‑117 (MQ=255) gCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGc < 1:3568/117‑1 (MQ=255) gggcgggcGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATgg < 2:462110/150‑1 (MQ=255) gggcgggcGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATgg < 2:462171/150‑1 (MQ=255) cTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGCGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCCGGGTATATGGTCCTGTCAGCCGAACTGCtt > 2:487742/1‑150 (MQ=255) tGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTc > 1:717612/1‑150 (MQ=255) gATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTct > 2:215326/1‑150 (MQ=255) aTCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTTATGGCCCTTTCGCggg < 2:693640/82‑1 (MQ=255) aTCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTTATGGCCCTTTCGCggg > 1:693640/1‑82 (MQ=255) gcgcTGGCTGAAATGAGAAGGCCGCGCCCTGAGAAGGGTGCGGCCTTTTTTTGTTGTTTTTGTTGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGGGCGGGTTATATGTCCCTGTCAGCCGAACTGCTTCTGCTGt > 2:525979/1‑150 (MQ=255) cgcTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGtt < 1:726807/150‑1 (MQ=255) tggctgAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTtat > 1:212872/1‑115 (MQ=255) tggctgAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTtat < 2:212872/115‑1 (MQ=255) gAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTtgctgctgc > 1:572130/1‑150 (MQ=255) gaAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGcca > 1:782256/1‑150 (MQ=255) aaGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATCGACCATGCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATTGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGccac < 1:794176/150‑1 (MQ=255) cgcgCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCTTGTGATGGTCCTTTCGCGGGCAAGAGGGCAGGTGCACCACAGGCACGTAGGAGCGGGTCATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGtt < 1:487742/150‑1 (MQ=255) cgcgCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTg < 1:34762/140‑1 (MQ=255) cgcgCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTg > 2:34762/1‑140 (MQ=255) gcgcCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTc < 2:642422/150‑1 (MQ=255) cgcCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCg < 2:533829/150‑1 (MQ=255) tgtgAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGTAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAgc < 1:539233/150‑1 (MQ=255) tgAAGGGTGCGGCCTTTTTTTGTGGCCTTGGATGGCCCTTTCGCGGGCAAGCCCGCGGGTTCACCACAGGCCCGTAGGAGCGGGGTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAgcgg > 1:839401/1‑150 (MQ=255) tgAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAgcgg > 2:830446/1‑150 (MQ=255) tGCGGCTTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGACGGTTTACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGAtata < 2:839401/150‑1 (MQ=255) tttttttGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTcc < 2:782256/150‑1 (MQ=255) tttttGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTCCTg < 1:28978/150‑1 (MQ=255) ttGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTCCTGGaa < 1:568040/150‑1 (MQ=255) | CTGCGCTGCTGAGTATTGGTGTGGTGGCGGCTGGCTTGCTGGTGCACC‑GCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTCCTGGAA > NC_002947/342784‑343075 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |