New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2719748 = | 28 (0.880) | 5 (0.170) | 5/236 | NT | 15.7% | coding (51/609 nt) | PP_2379 | cytochrome oxidase biogenesis protein |
? | NC_002947 | 2719779 = | 27 (0.900) | coding (82/609 nt) | PP_2379 | cytochrome oxidase biogenesis protein |
TGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCGAGCTTTTACG > NC_002947/2719600‑2719890 | actgggtgaagccgaagaagaccatcggcatgctgccgtaaaagctcgacagggcgagcaagttaccttgcgggattaggaggttgaacttgcgcccgaggatttcgttgctcctgttcttgccgtacttgaactcgagcccccgggccg < 1:319627‑M1/2‑1 (MQ=255) tCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTCTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGTCATGGGCGTTCTCGGGc < 2:100717/150‑1 (MQ=255) gTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTgg > 1:838280/1‑150 (MQ=255) aaCCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCctg > 1:19054/1‑150 (MQ=255) gtgtCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATAGGCGTTCTCGAGCTTGAGATCCTGGCAGGCTg > 2:48415/1‑150 (MQ=255) tcggcatgctgccgtaaaagctcgacagggtgcgcacgttaccttgcgggtctttgaggctgaacttgcgcccgaggatttcgttgctcatgttcttgccgtacttgaactcgagcccccgggcCGGGCTTGGCCTGCTGGCAGGCTGCa > 1:179855‑M1/125‑150 (MQ=255) gtCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCa < 2:19054/150‑1 (MQ=255) gACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAg < 1:35434/150‑1 (MQ=255) gACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAg > 1:82564/1‑150 (MQ=255) ggCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACg < 2:838280/150‑1 (MQ=255) cccGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGc < 1:48415/150‑1 (MQ=255) ccGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAAc > 1:155530/1‑150 (MQ=255) gAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACAt > 2:624843/1‑150 (MQ=255) gggCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGa < 1:624843/150‑1 (MQ=255) gggCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGa < 2:139296/150‑1 (MQ=255) cGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGTCTCGAGTTCAAGTACGGCAAGAACATGAGCaa > 1:730768/1‑150 (MQ=255) gtctttgaggctgaacttgcgcccgaggatttcgttgctcatgttcttgccgtacttgaactcgagcccccgggcCGGGCTTGGCCTGCTGGCAGGCTGCAgcccgg > 2:314770‑M1/76‑107 (MQ=255) gtctttgaggctgaacttgcgcccgaggatttcgttgctcatgttcttgccgtacttgaactcgagcccccgggcCGGGCTTGGCCTGCTGGCAGGCTGCAgcccgg < 1:314770‑M1/32‑1 (MQ=255) ccTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGaaa < 1:79409/150‑1 (MQ=255) gTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCa > 2:714025/1‑150 (MQ=255) ttCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGc < 2:155530/150‑1 (MQ=255) ccgaggatttcgttgctcatgttcttgccgtacttgaactcgagcccccgggcCGGGCTTGGCCTGCTGGCAGGCTGCAgcccg < 1:125610‑M1/31‑1 (MQ=255) ccgaggatttcgttgctcatgttcttgccgtacttgaactcgagcccccgggcCGGGCTTGGCCTGCTGGCAGGCTGCAgcccg > 2:125610‑M1/54‑84 (MQ=255) atgaatgaTCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTc > 1:718694/1‑150 (MQ=255) ttttGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGcccggcccgg > 1:517273/1‑77 (MQ=255) ttttGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGcccggcccgg < 2:517273/77‑1 (MQ=255) ttttGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGc > 2:667956/1‑98 (MQ=255) ttttGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGc < 1:667956/98‑1 (MQ=255) cccGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTa > 1:534398/1‑150 (MQ=255) ttGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTGAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCACAGTAACGTGCGCAccc > 2:590165/1‑150 (MQ=255) gCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCg < 1:24733/150‑1 (MQ=255) cGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCCCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCGAg > 1:329457/1‑150 (MQ=255) ggCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCa < 1:653748/103‑1 (MQ=255) ggCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCa > 2:653748/1‑103 (MQ=255) gCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCGAGCTTTTACg > 1:599964/1‑150 (MQ=255) | TGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCGAGCTTTTACG > NC_002947/2719600‑2719890 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |