New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 235331 = | 29 (0.920) | 11 (0.400) | 10/216 | NT | 31.8% | intergenic (+28/+97) | PP_0183/argH | glutathione S‑transferase/argininosuccinate lyase |
? | NC_002947 | 235390 = | 22 (0.800) | intergenic (+87/+38) | PP_0183/argH | glutathione S‑transferase/argininosuccinate lyase |
GGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGCAC > NC_002947/235252‑235538 | ggAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCAGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCAGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAAc > 1:814591/1‑150 (MQ=255) aGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAg < 2:718667/150‑1 (MQ=255) cATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTg > 1:392832/1‑150 (MQ=255) aTGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGTCCGCGAACGAGGGCGAAGCCCTCGCCTTgg < 2:842072/150‑1 (MQ=255) tGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTGTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTggg > 1:597456/1‑150 (MQ=255) ggAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTgggg > 1:768578/1‑150 (MQ=255) gagaTGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTCCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTggggg > 1:260273/1‑150 (MQ=255) cAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGAc < 2:597456/150‑1 (MQ=255) gCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGAGAGGCTCCACGTACGCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCaa > 2:590511/1‑150 (MQ=255) tCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCGGCACCGTTTTTGAAACTTGTGCATTCCCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGAGCGAAGCCCTCGCCTTGGGGGCTTAGCGAGCCGCCAACAGGGCCTTGcc > 2:259739/1‑150 (MQ=39) tGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCac > 1:110200/1‑150 (MQ=255) ccTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTgg < 2:70686/106‑1 (MQ=255) ccTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTgg > 1:70686/1‑106 (MQ=255) ccTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCga > 1:112291/1‑117 (MQ=255) ccTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCga < 2:112291/117‑1 (MQ=255) cATGCCCGCTCCCACAGGTCTGCACCGTTTTTGACACATGTGTA‑AACATTTGGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCt > 1:363756/1‑150 (MQ=255) cATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCt < 2:713196/150‑1 (MQ=255) cATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCt > 2:58942/1‑150 (MQ=255) CCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCga < 1:580169‑M1/102‑1 (MQ=255) CCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCga > 2:580169‑M1/1‑102 (MQ=255) tcccacaggtaatgcacaagtttcaaaaacggtgcagacctgtgggagcgggcATGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTGGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTgcgccggcg > 1:545687‑M2/54‑150 (MQ=255) CCCACAGGTCTGCACCGTTTTTGAAACTTGTGCGTTACCTGT‑GGGAGGGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACTCACCTgcgccggcgc > 2:814591‑M1/1‑150 (MQ=255) ccacaggtaatgcacaagtttcaaaaacggtgcagacctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTgcgccggcgcc > 1:332007‑M2/52‑150 (MQ=255) cacaggtaatgcacaagtttcaaaaacggtgcagacctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTgggg > 1:230759‑M2/51‑86 (MQ=255) cacaggtaatgcacaagtttcaaaaacggtgcagacctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTgggg < 2:230759‑M2/36‑1 (MQ=255) ACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGt < 2:208190‑M1/150‑1 (MQ=255) acaggtaatgcacaagtttcaaaaacggtgcagacctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTc < 2:51232‑M2/27‑1 (MQ=255) acaggtaatgcacaagtttcaaaaacggtgcagacctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTc > 1:51232‑M2/50‑76 (MQ=255) acaggtaatgcacaagtttcaaaaacggtgcagacctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTgg < 2:325176‑M2/34‑1 (MQ=255) acaggtaatgcacaagtttcaaaaacggtgcagacctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTgg > 1:325176‑M2/50‑83 (MQ=255) GTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGtaccc < 2:407658‑M1/150‑2 (MQ=255) gcacaagtttcaaaaacggtgcagacctgtgggagcgggcATGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTGGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAAt < 2:545687‑M2/110‑1 (MQ=255) cGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAAtgtg < 1:208190/150‑1 (MQ=255) aagtttcaaaaacggtgcagacctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGgcagc > 2:648501‑M2/37‑116 (MQ=255) aagtttcaaaaacggtgcagacctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGgcagc < 1:648501‑M2/80‑1 (MQ=255) ttGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGACGAAGCCCTAGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCAc > 1:131729/1‑150 (MQ=255) gAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCAcgc < 2:768578/150‑1 (MQ=255) aCTTTTGCATTTCCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGTATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCa < 1:429426/150‑1 (MQ=255) gCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCAcc > 2:238002/1‑150 (MQ=255) aTTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGGTTAGCGAGCCGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCAGTACCACCAATGGGCTCCCGCGCATTccacgg > 2:104061/1‑145 (MQ=255) ctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCtt > 1:47630‑M2/15‑150 (MQ=255) ctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCtt > 1:297684‑M2/15‑150 (MQ=255) gagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCAcgc > 1:242677‑M2/9‑128 (MQ=255) gagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCAcgc < 2:242677‑M2/120‑1 (MQ=255) gcgggcATGCCCGCGAACGAGGGCGAAGCCCTCGCCCTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTc < 1:161200‑M2/144‑1 (MQ=255) cGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGCAc < 2:332007‑M2/149‑1 (MQ=255) | GGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGCAC > NC_002947/235252‑235538 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |