Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 557,335 | Δ1 bp | 6.8% | intergenic (+75/‑134) | rpsN → / → rpsH | 30S ribosomal protein S14/30S ribosomal protein S8 |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 557,335 | 0 | T | . | 6.8% | 379.0 / 20.2 | 118 | intergenic (+75/‑134) | rpsN/rpsH | 30S ribosomal protein S14/30S ribosomal protein S8 |
Reads supporting (aligned to +/- strand): ref base T (50/60); new base . (4/4); total (54/64) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.79e-01 |
Only 100 of 119 total aligned reads displayed.
GGCCGTAACATGCTGCGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAGTATGCAGGACC > NC_002947/557192‑557484 | ggacGTAACATGCTGCGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCACGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑gg < 1:661074/147‑1 (MQ=255) tAACATGCTGCGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCtt < 1:578272/150‑1 (MQ=255) aaCATGCTGCGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTg < 2:107129/150‑1 (MQ=255) aaCATGCTGCGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTg < 1:362905/150‑1 (MQ=255) aCATGCTGCGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTgt < 1:1256719/150‑1 (MQ=255) aCATGCTGCGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTgt < 1:1736020/150‑1 (MQ=255) ctgcGTCAAGCTGCAATGCGCGGTGACGTACCTGGTCTGGTCAAGGCCTCCTGGTCATCGCTGCAGGCAAGGCCCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTgtttcgt < 2:2077236/150‑1 (MQ=255) gTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCt > 1:906010/1‑150 (MQ=255) gTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCt > 1:920280/1‑150 (MQ=255) cAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTTCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATCT‑GGTGCTTGTTTCGTTTCTGc < 2:101629/150‑1 (MQ=255) aaGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAA‑‑GCAGGTGTCGTTCGTCCGGCAGGCTTGCCAGGCGAAGAAACAAGCCCCTATAT‑GGGGCTAGATTTGTTTCTGcc > 1:891463/1‑150 (MQ=255) gCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGATTgtttcgtt > 2:2333751/1‑142 (MQ=255) tGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTTTTTCGTTTCTGCCTtgt < 2:1602339/150‑1 (MQ=255) tGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTtgt < 2:2157553/150‑1 (MQ=255) gTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGTGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACCTCTAGGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGa < 1:1642387/150‑1 (MQ=255) tGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGAc < 1:2170171/150‑1 (MQ=255) tGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGAc < 2:1776201/150‑1 (MQ=255) gACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGACCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGAcc > 2:1517809/1‑150 (MQ=255) aCGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCg > 2:1995677/1‑150 (MQ=255) gTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGc > 2:1858491/1‑150 (MQ=255) aGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCAcc > 2:2405463/1‑150 (MQ=255) tGGTCAAGGCCTCCTGGTAATCGCTGCATGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCC‑ATATAGGGGCt > 1:1777627/1‑105 (MQ=255) tGGTCAAGGCCTCCTGGTAATCGCTGCATGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCC‑ATATAGGGGCt < 2:1777627/105‑1 (MQ=255) gTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCt > 2:383439/1‑150 (MQ=255) tCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTg > 1:1052934/1‑150 (MQ=255) aaGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑gg > 1:301716/1‑96 (MQ=255) cctcctGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGtttt > 1:821475/1‑150 (MQ=255) ctcctGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGttttt > 1:105144/1‑150 (MQ=255) ctcctGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGttttt < 1:1456414/150‑1 (MQ=255) tGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGccc > 2:2145389/1‑150 (MQ=255) tAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCaaa < 1:2287888/150‑1 (MQ=255) aTCGCTTCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCt < 1:2867/127‑1 (MQ=255) aTCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCt > 2:2867/1‑127 (MQ=255) tCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACgg > 2:548961/1‑150 (MQ=255) gCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGAc < 2:106881/114‑1 (MQ=255) gCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGAc > 1:106881/1‑114 (MQ=255) cTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGc < 2:1716213/127‑1 (MQ=255) cTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGc > 1:1716213/1‑127 (MQ=255) cTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTc < 2:2355853/150‑1 (MQ=255) tGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCC‑ATATAGGGGCTTgtttgtt < 2:664299/89‑4 (MQ=37) tGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCC‑ATATAGGGGCTTgtttgtt > 1:664299/1‑86 (MQ=37) gCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCgg < 1:460658/150‑1 (MQ=255) ggCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGggtg < 1:1995677/150‑1 (MQ=255) aaGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCCCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGtt > 1:1105912/1‑150 (MQ=255) aaGGCGCGGGTGGAAGGGGAGAAATCTTCCGACC‑GCCGG‑TGACCTTGACAACAAACAAGCCCATATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGACTGCCCGGGTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGggtggtg < 2:945916/150‑2 (MQ=255) aGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGggtggt < 1:436494/148‑1 (MQ=255) aGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGggtggt > 2:436494/1‑148 (MQ=255) ggCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGt < 2:345212/150‑1 (MQ=255) ggCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGAACCTATAT‑GGGGCTTGTTTCGTTTCTGACTTGGGTCTAGTATGGCCGGCTCTGCTGAGCCTGGGTGTTTGCCCAAACGGTTCGGGTGGTTGt < 2:275712/150‑1 (MQ=255) ggTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGc < 2:105144/150‑1 (MQ=255) gAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGc < 2:540802/61‑1 (MQ=255) aaGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCaa < 2:906010/150‑1 (MQ=255) aGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTTTTCTATTGGTTCGGGTGGTTGTCATAGCCGCAAg > 2:1798397/1‑150 (MQ=255) aGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAg > 1:702011/1‑150 (MQ=255) ggAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCt > 2:1475153/1‑150 (MQ=255) aGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCtaa > 2:490625/1‑150 (MQ=255) aaTCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCtaataa > 1:2018474/1‑150 (MQ=255) aTCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGAACGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTaataat > 2:1556005/1‑150 (MQ=255) ttCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCaaa < 2:2072698/110‑1 (MQ=255) ttCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCaaa > 1:2072698/1‑110 (MQ=255) ttCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCt > 2:18088/1‑150 (MQ=255) ttCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCt < 1:18088/150‑1 (MQ=255) tCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCtt < 2:1511526/150‑1 (MQ=255) tCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCtt < 2:1144740/150‑1 (MQ=255) tCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCtt < 2:1765181/150‑1 (MQ=255) tCCGACC‑CCCGG‑TGACCTTCCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCtt < 1:1192377/150‑1 (MQ=255) ccGACC‑GCTGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTg < 1:548961/150‑1 (MQ=255) ccGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTg < 2:1358503/150‑1 (MQ=255) gACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGcc > 1:1117123/1‑102 (MQ=255) gACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGcc < 2:1117123/102‑1 (MQ=255) aCC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTAt > 2:1937341/1‑150 (MQ=255) c‑gccgG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCa < 1:537244/150‑1 (MQ=255) gccgG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAg < 2:821475/150‑1 (MQ=255) cgatctccTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGa < 1:743032/144‑1 (MQ=255) g‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTtgt < 2:476385/55‑1 (MQ=255) g‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTtgt > 1:476385/1‑55 (MQ=255) g‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGc < 1:1858491/150‑1 (MQ=255) g‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCCCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGc < 2:1105912/150‑1 (MQ=255) cTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCTCAAACGGGCCGGGTGGTTGTCATAGCCGCAAGGCTAATAGTAGTTGTATgaggagggagcg > 2:743032/1‑144 (MQ=255) cTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTa > 1:2159834/1‑150 (MQ=255) ttGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAg < 1:1475153/150‑1 (MQ=255) caacaaACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGggtggt < 1:2326320/101‑1 (MQ=255) gaaacaaGCCCC‑ATATAGGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCggg < 1:838875/93‑1 (MQ=38) gaaacaaGCCCC‑ATATAGGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCggg > 2:838875/2‑94 (MQ=38) caaacaaGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGa < 2:702011/150‑1 (MQ=255) caaacaaGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGAACGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGa < 1:1556005/150‑1 (MQ=255) aaacaaGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGtt < 1:25570/98‑1 (MQ=255) aaacaaGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGtt > 2:25570/1‑98 (MQ=255) aaacaaGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAg > 2:1494659/1‑150 (MQ=255) aaacaaGCCCC‑ATATAGGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAg > 2:842113/1‑150 (MQ=255) aaGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAGTCTg < 1:2405463/150‑1 (MQ=255) cgCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAACGGTCGGCTCACCTGCGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATACTTCTTGTATCAGGAGCATCTAGCCCATGAGTATGc < 1:1478029/149‑1 (MQ=255) aGCACCTATAT‑GGTGCTTGCTTCGTTTCTGCCTTCTGTCTAGAATGCCCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAAAAATTCTTGTATCAGGAGCATCTAGCCCATGAGTATGc < 1:1517809/150‑1 (MQ=255) cccTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGACCAAACGGTTCGGGTGGTTTTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAGTATGCAgg > 1:979068/1‑150 (MQ=255) ccTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATa > 2:112668/1‑95 (MQ=255) ccTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATa < 1:112668/95‑1 (MQ=255) cTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCCCCTGCGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAGTATGCAGGAc > 2:1791155/1‑150 (MQ=255) cTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAGTATGCAGGAc > 1:2193671/1‑150 (MQ=255) cTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTATGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAGTATGCAGGAc > 2:1736881/1‑150 (MQ=255) tataT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAGTATGCAGGAcc < 1:490625/150‑1 (MQ=255) | GGCCGTAACATGCTGCGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAGTATGCAGGACC > NC_002947/557192‑557484 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |