New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2436708	103 (1.160)	5 (0.070) +TCGTTACAGAACAGATTGACCAGCCTGGAT	4/186	NT	6.8%	intergenic (+243/‑416)	PP_2134/fadB	transposase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase
	?	NC_002947	= 3973164	79 (0.890)					intergenic (+158/+27)	PP_3502/PP_3503	transposase/sigma‑54 dependent transcriptional regulator

GGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2436663‑2436708 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCCTGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAG  <  NC_002947/3973164‑3973090                                               ||||||||||||||||||||||||||||||                                                                            GGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGTCGTTACAGAACAGATTGACCAGCCTGGATGCCCCCGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAG                                     >  1:111913/1‑116 GGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGTCGTTACAGAACAGATTGACCAGCCTGGATGCCCCCGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAG                                     <  2:111913/116‑1  GCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGTCGTTACAGAACAGATTGACCAGCCTGGATGCCCCCGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCA             <  1:885507/139‑1  GCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGTCGTTACAGAACAGATTGACCAGCCTGGATGCCCCCGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCA             >  2:885507/1‑139  GCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCCGTTACAGAAGAGATTGACCAGCCTGGATGCCCCCGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGTCCTCTCTCAGCAACCTCGAG  >  2:1894140/1‑150                                               ||||||||||||||||||||||||||||||                                                                            GGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2436663‑2436708 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCCTGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAG  <  NC_002947/3973164‑3973090

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.