New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2457379 =	92 (1.040)	5 (0.060)	7/244	NT	5.4%	coding (407/999 nt)	PP_2150	thiamine biosynthesis lipoprotein
	?	NC_002947	2457401 =	85 (0.970)					coding (429/999 nt)	PP_2150	thiamine biosynthesis lipoprotein

CCATGGCCTGCAGGCGCGCAGCGATCAAGTCGACAGCATGACCGGCGACGATGCTGTTGAAGTCGAGCTGCACCGGGGCATCCTTGCACAGGGCTCGACCTTTGACGCGCAAGTGCTGGTAACCCACACGCTGGCGCACCTGGGCCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2457528‑2457379 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTGTGGGTTACCAGCACTTGCGCGTCAAAGGTCGAGCCCTGTGCAAGGATGCCCCGGTGCAGCTCGACTTCAACAGCATCGTCGCCGGTCATGCTGTCGACTTGATCGCTGCGCGCCTGCAGGCCATGGGTGTCAGCAGTTTTGTCGCCG  >  NC_002947/2457401‑2457549                                                                                                                                                                                                                                                                                                             CCATGGCCTGCAGGCGCGCAGCGATCAAGTCGACAGCATGACCGGCGACGATGCTGTTGAAGTCGAGCTGCACCGGGGCATCCTTGCACAGGGCTCGACCTTTGACGCGCAAGTGCTGGTAACCCACACGCTGGCGCACCTGGGCCAGTG                                                                                                                                                       >  2:1301822/1‑150                                                                    CTGCACCGGGGCATCCTTGCACAGGGCTCGACCTTTGACGCGCAAGTACTGGTAACCCACACACTGGCCCAGGTGCGCCAGCGTGTGG                                                                                                                                                  >  1:343610/1‑88                                                                    CTGCACCGGGGCATCCTTGCACAGGGCTCGACCTTTGACGCGCAAGTACTGGTAACCCACACACTGGCCCAGGTGCGCCAGCGTGTGG                                                                                                                                                  <  2:343610/88‑1                                                                                    TTGCACAGGGCTCGACCTTTGACGCGCAAGTGCTGGTAACCCACACACTGGCCCAGGTGCGCCAGCGTGTGGGTTACCAGCACTTGC                                                                                                                                   <  1:1492851/87‑1                                                                                    TTGCACAGGGCTCGACCTTTGACGCGCAAGTGCTGGTAACCCACACACTGGCCCAGGTGCGCCAGCGTGTGGGTTACCAGCACTTGC                                                                                                                                   >  2:1492851/1‑87                                                                                                                                  GCTGGCGCACCTGGGCCAGTGTGTGGGTTACCAGCACTTGCGCGTCAAAGGTCGAGCCCTGTGCAAGGATGCCCCGGTGCAGCTCGACTTCAACAGCATCGTCGCCGGTCATGCTGTCGACTTGATCGCTGCGCGCCTGCAGGCCATGGG                      >  2:192162/1‑150                                                                                                                                   CTGGCGCACCTGGGCCAGCGTGTGGGTTACCAGCACTTGCGCGTCAAAGGTCGAGCCCTGTGCAAGGATGCCCCGGT                                                                                              >  1:1901372/1‑77                                                                                                                                   CTGGCGCACCTGGGCCAGCGTGTGGGTTACCAGCACTTGCGCGTCAAAGGTCGAGCCCTGTGCAAGGATGCCCCGGT                                                                                              <  2:1901372/77‑1                                                                                                                                                      GTGTGGGTTACCAGCACTTGCGCGTCAAAGGTCGAGCCCTGTGCAAGGATGCCCCGGTGCAGCTCGACTTCAACAGCATCGTCGCCGGTCATGCTGTCGACTTGATAGCCCCTCGCCTGCAGGCCATGGGTGTCAGCAGTTTTGTCGCCG  >  1:23060/1‑150                                                                                                                                                                                                                                                                                                             CCATGGCCTGCAGGCGCGCAGCGATCAAGTCGACAGCATGACCGGCGACGATGCTGTTGAAGTCGAGCTGCACCGGGGCATCCTTGCACAGGGCTCGACCTTTGACGCGCAAGTGCTGGTAACCCACACGCTGGCGCACCTGGGCCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2457528‑2457379 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTGTGGGTTACCAGCACTTGCGCGTCAAAGGTCGAGCCCTGTGCAAGGATGCCCCGGTGCAGCTCGACTTCAACAGCATCGTCGCCGGTCATGCTGTCGACTTGATCGCTGCGCGCCTGCAGGCCATGGGTGTCAGCAGTTTTGTCGCCG  >  NC_002947/2457401‑2457549

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.