| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4012772 | 71 (0.800) | 4 (0.050) | 4/232 | NT | 5.0% | coding (564/900 nt) | mvaB | hydroxymethylglutaryl‑CoA lyase |
| ? | NC_002947 | = 4012789 | 84 (1.010) | coding (581/900 nt) | mvaB | hydroxymethylglutaryl‑CoA lyase | |||||
GTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4012668‑4012772‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacaccACCTCGAACAGGCGTCGGGTGTCGCCTGCGGTACCGGTGCCGATGGTGTCACCCAGCGAGACCTCGTAGCAGCCCATGTCGTGCAGGGCGCGGGCCACCGGGGCCACCTGCTCGGCGCTGACCTTGCCCTCGTAAGGGCAGCCAAGCAC < NC_002947/4012789‑4012641 GTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACC < 1:735195/105‑1GTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACC > 2:735195/1‑105 GACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCACCTCGAACAGGCGTCGGGTGTC > 1:190363/1‑86 GACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCACCTCGAACAGGCGTCGGGTGTC < 2:190363/86‑1 TGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCACCTCGAACAGGCGTCGG < 1:980372/77‑1 TGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCACCTCGAACAGGCGTCGG > 2:980372/1‑77 ACCACCTCGAACAGGCGTCGGGTGTCGCCTACGGTGGCGGACGGTTTGGTGTCACCCAGCGAGACCTCGTAGGCCTGCATGTCGTGCAGGGCGCGGGCCACCGGGGCCACCTGCTCGGCGCTGACCTTGCCCTCGTAAGGGCAGCCAAGC < 1:1142049/150‑1 CACCTCGAACAGGCGTCGGGTGTCGCCTGCGGTACCGGTGCCGATGGTGTCACCCAGCGAGACCTCGTAGCAGCCCATGTCGTGCAGGGCGCGGGCCACCGGGGCCACCTGCTCGGCGCTGACCTTGCCCTCGTAAGGGCAGCCAAGCAC > 2:1836401/1‑150 CACCTCGAACAGGCGTCGGGTGTCGCCTGCGGTACCGGTGCCGATGGTGTCACCCAGCGAGACCTCGTAGCAGCCCATGTCGTGCAGGGCGCGGGCCACCGGGGCCACCTGCTCGGCGCTGACCTTGCC > 1:2303690/1‑129 CACCTCGAACAGGCGTCGGGTGTCGCCTGCGGTACCGGTGCCGATGGTGTCACCCAGCGAGACCTCGTAGCAGCCCATGTCGTGCAGGGCGCGGGCCACCGGGGCCACCTGCTCGGCGCTGACCTTGCC < 2:2303690/129‑1 CACCTCGAACAGGCGTCGGGTGTCGCCTGCGGTACCGGTGCCGATGGTGTCACCCAGCGAGACCTCGTAGCAGCCCATGTCGTGCAGGGCGCGG < 1:2145532/94‑1 CACCTCGAACAGGCGTCGGGTGTCGCCTGCGGTACCGGTGCCGATGGTGTCACCCAGCGAGACCTCGTAGCAGCCCATGTCGTGCAGGGCGCGG > 2:2145532/1‑94 GTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4012668‑4012772‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacaccACCTCGAACAGGCGTCGGGTGTCGCCTGCGGTACCGGTGCCGATGGTGTCACCCAGCGAGACCTCGTAGCAGCCCATGTCGTGCAGGGCGCGGGCCACCGGGGCCACCTGCTCGGCGCTGACCTTGCCCTCGTAAGGGCAGCCAAGCAC < NC_002947/4012789‑4012641 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |