New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	235331 =	55 (1.220)	12 (0.300)	10/232	3.0	21.4%	intergenic (+28/+97)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
	?	NC_002947	235390 =	40 (1.010)					intergenic (+87/+38)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase

GTGGTACGGCGCCGGCGCAGGTGCGTGCTGCCGTCGTTCGTGGCAAGGCCCTGTTGGCGTCTCGCTAATCCCCCAAGGCGAGGGCTTCGCCCTCGTTCGCGGGCACGCCCGCTCCCACAGGTAATGCACAAGTTTCAAAAACGGTGCAGACCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/235495‑235331 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCC  >  NC_002947/235390‑235523                                                                                                                                                                                                                                                                                                             GTGGTACGGCGCCGGCGCAGGTGCGTGCTGCCGTCGTTCGTGGCAAGGCCCTGTTGGCGTCTCGCTAATCCCCCCAGGCGAGGGCTTCGCCCTCGTTCGCGGGCACGCCCGCTCCCACAGGTAATGCACAAGTTTCAAAAACGGTGCAGA                                                                                                                                                       >  1:120275/1‑150       CGGCGCCGGCGCAGGTGCGTGCTGCCGTCGTTCGTGGCAAGGCCCTGTTGGCGTCTCGCTAATCCCCCAAGGCGAGGGCTTCGCCCTCGTTCGCGGGCACGCCCGCTCCCACAGGTAATGCACAAGTTTCAAAAACGGTGCAGACCTGTG                                                                                                                                                 <  2:676120/150‑1        GGCGCCGGCGCAGGTGCGTGCTGCCGTCGTTCGTGGCAAGGCCCTGTTGGCGTCTCGCTAATCCCCCAAGGCGAGGGCTTCGCCCTCGTTCGCGGGCACGCCCGCTCCCACAGGTAATGCACAAGTTTCAAAAACGGTGCAGACCTGTGG                                                                                                                                                <  1:186409/150‑1             CGGCGCAGGTGCGTGCTGCCGTCGTTCGTGGCAAGGCCCTGTTGGCGTCTCGCTAATCCCCCAAGGCGAGGGCTTCGCCCTCGTTCGCGGGCACGCCCGCTCCCACAGGTAATGCACAAGTTTCAAAAACGGTGCAGACCTGTGGGAGCG                                                                                                                                           <  2:487905/150‑1              GGCGCAGGTGCGTGCTGCCGTCGTTCGTGGCAAGGCCCTGTTGGCGTCTCGCTAATCCCCCAAGGCGAGGGCTTCGCCCTCGTTCGCGGGCACGCCCGCTCCCACAGGTAATGCACAAGTTTCAAAAACGGTGCAGACCTGTGGGAGCGG                                                                                                                                          <  2:353077/150‑1                                                  CCTGTTGGCGTCTCGCTAATCCCCCAAGGCGAGGGCTTCGCCCTCGTTCGCGGGCACGCCCGCTCCCACAGGTAATGCACAAGTTTCAAAAACGGTGCAGACCTGTGGGAGCGGGC                                                                                                                                        >  1:1069785/1‑116                                                  CCTGTTGGCGTCTCGCTAATCCCCCAAGGCGAGGGCTTCGCCCTCGTTCGCGGGCACGCCCGCTCCCACAGGTAATGCACAAGTTTCAAAAACGGTGCAGACCTGTGGGAGCGGGC                                                                                                                                        <  2:1069785/116‑1                                                                                                                   CCACAGGTAATGCACAAGTTTCAAAAACGGTGCAGACCTGTGGGAGCGGGCATGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCC                                     >  1:613911/1‑150                                                                                                                    CACAGGTAATGCACAAGTTTCAAAAACGGTGCAGACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGC                                                                                             >  2:1006490/1‑93                                                                                                                    CACAGGTAATGCACAAGTTTCAAAAACGGTGCAGACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGC                                                                                             <  1:1006490/93‑1                                                                                                                     ACAGGTAATGCACAAGTTTCAAAAACGGTGCAGACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCA                                                          >  2:248025/1‑127                                                                                                                     ACAGGTAATGCACAAGTTTCAAAAACGGTGCAGACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCA                                                          <  1:248025/127‑1                                                                                                                     ACAGGTAATGCACAAGTTTCAAAAACGGTGCAGACCTGTGGGAGCGGGCGTGCCCGCGAACGA                                                                                                                          >  1:655470/1‑63                                                                                                                     ACAGGTAATGCACAAGTTTCAAAAACGGTGCAGACCTGTGGGAGCGGGCGTGCCCGCGAACGA                                                                                                                          <  2:655470/63‑1                                                                                                                      CAGGTAATGCACAAGTTTCAAAAACGGTGCAGAACTGACGACGCGGGCGAGCCCGCGAACGAGGGCAAAGATGTCGCCTTGGGGGTTTAGCGAGACGCCAACAGTGCGGTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTA                                  >  2:699721/1‑150                                                                                                                       AGGTAATGCACAAGTTTCAAAAACGGTGCAGACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGA                                                                                                  <  1:771376/85‑1                                                                                                                       AGGTAATGCACAAGTTTCAAAAACGGTGCAGACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGA                                                                                                  >  2:771376/1‑85                                                                                                                       AGGTAATGCACAAGTTTCAAAAACGGTGCAGACCTGTGGGAGCGGGCATGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGGTTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTAC                                 >  2:637071/1‑150                                                                                                                                        CAAAAACGGTGCAGACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGC                <  1:699721/150‑1                                                                                                                                                      ACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCC  >  1:45136/1‑150                                                                                                                                                                                                                                                                                                             GTGGTACGGCGCCGGCGCAGGTGCGTGCTGCCGTCGTTCGTGGCAAGGCCCTGTTGGCGTCTCGCTAATCCCCCAAGGCGAGGGCTTCGCCCTCGTTCGCGGGCACGCCCGCTCCCACAGGTAATGCACAAGTTTCAAAAACGGTGCAGACCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/235495‑235331 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCC  >  NC_002947/235390‑235523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.