New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 196722010 (0.220)11 (0.330) 9/198 2.7 53.0% intergenic (+47/+72) PP_1762/yciK hypothetical protein/putative oxidoreductase
?NC_002947 = 1967250 12 (0.360)intergenic (+77/+42) PP_1762/yciK hypothetical protein/putative oxidoreductase

CGGACCGAGTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1967051‑1967220
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctcttcgcgggcttgcccgctcccacaggCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGGAAAGCGATCAGCCCGCAGCCAACGCCGGCCGCATACGGCCTTGCTGGCGCCCTTCCAGCTGCATGCAGCGCTC  <  NC_002947/1967250‑1967108
                                                                                                                                                                                                                                                                                                                         
CGGACCGAGTTGCGCAGGGCGATCTGCAAGATTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCG                                                                                                                                                                     <  2:1014801/150‑1
       AGTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGC                                                                                                                                                              >  1:173164/1‑150
       AGTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGC                                                                                                                                                              <  2:211271/150‑1
         TTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC                                                                                                                                                            <  2:253044/150‑1
             GCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCga                                                                                                                                                        >  2:33086/1‑148
              CAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCgaa                                                                                                                                                       <  1:33086/150‑4
                   CGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAG                                                                                                                                                  <  1:502889/150‑1
                                                 TGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCgaa                                                                                                                                                       >  2:349396/1‑112
                                                 TGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCgaa                                                                                                                                                       <  1:349396/115‑4
                                                         GAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGG                                                                                                            <  2:811404/150‑1
                                                         GAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGG                                                                                                            <  1:362207/150‑1
                                                         GAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGG                                                                                                            <  1:572005/150‑1
                                                               TGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGAGCGG                                                                                                      <  2:262497/150‑1
                                                                           GAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATC                                                                                                                  <  1:183975/126‑1
                                                                           GAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATC                                                                                                                  >  2:183975/1‑126
                                                                                GCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGCATCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTG                                                                                                             >  2:918346/1‑126
                                                                                GCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGCATCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTG                                                                                                             <  1:918346/126‑1
                                                                                        AAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTATCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGCAGGGCGCAATCCTGGAGGGTTGCGGTGATCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACA                                                                             <  1:712553/150‑1
                                                                                                                 TGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGAGCG                                                                                                       <  2:316300/99‑1
                                                                                                                 TGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGAGCG                                                                                                       >  1:316300/1‑99
                                                                                                                                                TTCGCGGGCTTGCCCGCTCCCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGGAAAGCGATCAGCCCGCAGCCAACGCCGGCCGCATACGGCCTTGCTGGCGCCCTT                     >  2:642008/1‑150
                                                                                                                                                            CCCGCTCCCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGGAAAGCGATCAGCCCGCAGCCAACGCCGGCCGCATACGGCCTTGCTGGCGCCCTTCCAGCTGCATGC         >  2:173164/1‑150
                                                                                                                                                               GCTCCCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGGAAAGCGATCAGCCCGCAGCCAACGCCGGCCGCATACGGCCTTGCTGGCGCCCTTCCAGCTGCATGCAGC      >  1:957653/1‑150
                                                                                                                                                                CTCCCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGAGCGGGCAAGCCCGCGAA                                                                                         >  2:257065/1‑66
                                                                                                                                                                CTCCCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGAGCGGGCAAGCCCGCGAA                                                                                         <  1:257065/66‑1
                                                                                                                                                                   CCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGAGCGGGCAAGCCCGTGAAGAGGCCGGTACAGGAAAGCGATCAGCCCGCAGCCAACGCCGGCCGCATACGGCCTTGCTGGCGCCCTTCCAGCTGCATGCCGCGCTC  >  2:237670/1‑150
                                                                                                                                                                   CCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGTAAAGCGATCAGCCCGCAGCCAACGCCGGCCGCATACGGCGTTGCTGGCGCCCTTCCAGCTGCATGCAGCGCTC  >  1:708193/1‑150
                                                                                                                                                                    CACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGAGCGG                                                                                                      <  2:1014050/49‑1
                                                                                                                                                                    CACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGAGCGG                                                                                                      >  1:1014050/1‑49
                                                                                                                                                                                                                                                                                                                         
CGGACCGAGTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1967051‑1967220
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctcttcgcgggcttgcccgctcccacaggCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGGAAAGCGATCAGCCCGCAGCCAACGCCGGCCGCATACGGCCTTGCTGGCGCCCTTCCAGCTGCATGCAGCGCTC  <  NC_002947/1967250‑1967108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.