| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5734099 = | 56 (1.240) | 12 (0.300) | 10/234 | 3.0 | 19.4% | intergenic (‑69/+88) | proY/hutH | proline (histidine) APC transporter/histidine ammonia‑lyase |
| ? | NC_002947 | 5734152 = | 50 (1.250) | intergenic (‑122/+35) | proY/hutH | proline (histidine) APC transporter/histidine ammonia‑lyase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGAAAAGGCCGTGGACCTGTTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5734262‑5734099‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcgggcgCGCCCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGC > NC_002947/5734152‑5734298 CGAAAAGGCCGTGGACCTGTTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCC > 1:682155/1‑150 AAAGGCCGTGGACCTGTTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGT > 2:13948/1‑150 AAAGGCCGTGGACCTGTTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCAAAAAAATAAGTGCAAAACACCATCCCCTGT < 2:253496/150‑1 CGTGGACCTGTTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGC > 2:126171/1‑150 TGGACCTGTTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGG < 2:1050477/150‑1 TGTTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGG < 1:237981/138‑1 TGTTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCATGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGG > 2:237981/1‑138 CAAGGGTAGTCTGACCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTG < 1:664526/130‑1 CAAGGGTAGTCTGACCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTG > 2:664526/1‑130 AAGGGTAGTCTGACCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGCGCCCGCGAA‑G > 2:1034382/1‑150 GGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGT < 2:523939/102‑1 GGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGT > 1:523939/1‑102 GTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGG > 2:1035418/1‑105 GTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGG < 1:1035418/105‑1 AAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGG < 2:618262/95‑1 AAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGG > 1:618262/1‑95 TGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTG < 1:221332/83‑1 TGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTG > 2:221332/1‑83 GCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGCGCCCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTC > 1:903824/1‑127 GCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGCGCCCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTC < 2:903824/127‑1 GCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGCGCCCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACG > 2:422013/1‑150 CCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGCGCCCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCT > 2:984058/1‑150 CACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCACGCCGGTCAGACTACCCATCGCCGACCGGACCAGGGCCgt > 2:354761/1‑148 CACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGCGCCCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTT > 2:21955/1‑150 CACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGCGCCCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTT > 1:445607/1‑150 AAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCG > 1:1137383/1‑150 AAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGCGCCCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGA < 1:984058/150‑1 ACACCATCCCCTGTGGGAGCGGGCGCGCCCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAA < 1:422013/150‑1 CATCCCCTGTGGGAGCGGGCGCGCCCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAA < 2:445607/150‑1 TGTGGGAGCGGGCGCGCCCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCAC > 1:88626/1‑150 ccttcGCGGGCGCGCCCGCTAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGG > 2:420173/6‑144 ccttcGCGGGCGCGCCCGCTAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGG < 1:420173/139‑1 GGAGCGGGCGCGCCCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTC > 2:1035846/1‑150 GGAGCGGGCGCGCCCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTC < 2:88626/150‑1 GAGCGGGCGCGCCCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCG < 1:556530/150‑1 GAGCGGGCGCGCCCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCG < 1:495649/150‑1 GGCGCGCCCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTG > 1:1142570/1‑150 GCGCGCCCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGC < 1:1035846/150‑1 CGAAAAGGCCGTGGACCTGTTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5734262‑5734099‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcgggcgCGCCCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGC > NC_002947/5734152‑5734298 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |