New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	309297 =	42 (0.930)	11 (0.270)	10/242	3.1	21.9%	intergenic (+1/+56)	PP_0254/PP_0255	hypothetical protein/hypothetical protein
	?	NC_002947	309327 =	40 (0.970)					intergenic (+31/+26)	PP_0254/PP_0255	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.

TGTACCGTCCGGGCGAATCGGACGCATGCGCGGCAGGCACGGTGGTGCAGGTGTTCATCGAGCGCGCCAGTGGCCGGCCTGTGGCGTTGCCAGAGGCGCTGCAGGTGATCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCGCGCCAGTGGCGCTTGTGCTTGCGGTGGCCATAATGGTGACCACGGTCCCAGTGACGACGGTCGTCGTCGTAGCCGCGACGATAGCGG  >  NC_002947/309154‑309446                                                                                                                                                |                                                                                                                                                      tGTACCGTCCGGGCGAATCGGACGCATGCGCGGCAGGCACGGTGGTGCAGGTGTTCATCGAGCGCGCCAGTGGCCGGCCTGTGGCGTTGCCAGAGGCGCTGCAGGTGATCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGcc                                                                                                                                                 >  1:389246/1‑150 (MQ=255)           gggCGAATCGGACGCATGCGCGGCAGGCACGGTGGTGCAGGTGTTCATCGAGCGCGCCAGTGGCCGGCCTGTGGCGTTGCCAGAGGCGCTGCAGGTGATCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAg                                                                                                                                       <  1:580116/150‑1 (MQ=255)                 aTCGGACGCATGCGCGGCAGGCACGGTGGTGCAGGTGTTCATCGAGCGCGCCAGTGGCCGGCCTGTGGCGTTGCCAGAGGCGCTGCAGGTGATCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAggggcgg                                                                                                                                 >  2:1140918/1‑150 (MQ=255)                        gCATGCGCGGCAGGCACGGTGGTGCAGGTGTTCATCGAGCGCGCCAGTGGCCGGCCTGTGGCGTTGCCAGAGGCGCTGCAGGTGATCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCtttt                                                                                                                          <  2:389246/150‑1 (MQ=255)                                       aCGGTGGTGCAGGTGTTCATCGAGACCACCAGTGGCCGGCCTGTGGCGTTGCCAGAGGCGCTGCAGGTGATCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAgg                                                                                                           <  1:571909/150‑1 (MQ=255)                                           tggtgCAGGTGTTCATCGAGCGCGCCAGTGGCCGGCCTGTGGCGTTGCCAGAGGCGCTGCAGGTGATCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGccc                                                                                                       <  1:946075/150‑1 (MQ=255)                                                cAGGTGTTCATCGAGCGCGCCAGTGGCCGGCCTGTGGCGTTGCCAGAGGAGCTGCAGGTGATCCTGTTCGTCTGCGTGCTGTAGTGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAgg                                                                                                  <  2:698596/150‑1 (MQ=255)                                                 aGGTGTTCATCGAGCGCGCCAGTGGCAGGCCTGTGGCGTTGCCAGAGGCGCTGCAGGTGATCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTttgtt                                                                                                                       <  1:1134684/128‑1 (MQ=255)                                                 aGGTGTTCATCGAGCGCGCCAGTGGCAGGCCTGTGGCGTTGCCAGAGGCGCTGCAGGTGATCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTttgtt                                                                                                                       >  2:1134684/1‑128 (MQ=255)                                                   gtgtTCATCGAGCGCGCCAGTGGCCGGCCTGTGGCGTTGCCAGAGGCGCTGCAGGTGATCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGt                                                                                               <  1:283823/150‑1 (MQ=255)                                                         aTCGAGCGCGCCAGTGGCCGGCCTGTGGCGTTGCCAGAGGCGCTGCAGGTGATCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTcg                                                                                         >  2:565710/1‑150 (MQ=255)                                                            gAGCGCGCCAGTGGCCGGCCTGTGGCGTTGCCAGAGGCGCNGCAGGTGATCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCgcgc                                                                                      >  1:781650/1‑150 (MQ=255)                                                                  gcCAGTGGCCGGCCTGTGGCGTTGCCAGAGGCGCTGCAGGTGATCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCGCGCCAGTgg                                                                                >  2:764157/1‑150 (MQ=255)                                                                    cAGTGGCCGGCCTGTGGCGTTGCCAGAGGCGCTGCAGGTGATCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCGCGCCAGTGgcg                                                                              >  2:90475/1‑150 (MQ=255)                                                                      gTGGCCGGCCTGTGGCGTTGCCAGAGGCGCTGCAGGTGATCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCAT‑AAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCGCGCCAGTGGCGCtt                                                                           >  2:453961/1‑150 (MQ=255)                                                                           cggccTGTGGCGTTGCCAGAGGCGCTGCAGGTGATCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCGCGCCAGTGGCGCTTGTGc                                                                       >  2:122746/1‑150 (MQ=255)                                                                                      gTTGCCAGAGGCGCTGCAGGTGATCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCtt                                                                                                                            <  2:14261/86‑1 (MQ=255)                                                                                      gTTGCCAGAGGCGCTGCAGGTGATCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCtt                                                                                                                            >  1:14261/1‑86 (MQ=255)                                                                                      gTTGCCAGAGGCGCTGCAGGTGATCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCGCGCCAGTGGCGCTTGTGCTTGCGGTGGcc                                                            >  1:617078/1‑150 (MQ=255)                                                                                      gTTGCCAGAGGCGCTGCAGGTGATCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCGCGCCAGTGGCGCTTGTGCTTGCGGTGGcc                                                            >  2:775402/1‑150 (MQ=255)                                                                                             gagGCGCTGCAGGTGATCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAggggcggggc                                                                                                                              >  1:760284/1‑77 (MQ=255)                                                                                             gagGCGCTGCAGGTGATCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAggggcggggc                                                                                                                              <  2:760284/77‑1 (MQ=255)                                                                                                   cTGCAGGTGATCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCGCGCCAGTGGCGCTTGTGCTTGCGGTGGCCATAATGGTGACCa                                               >  2:367666/1‑150 (MQ=255)                                                                                                          tGATCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCGCGCCAGTGGCGCTTGTGCTTGCGGTGGCCATAATGGTGACCACGGTccc                                        >  2:751249/1‑150 (MQ=255)                                                                                                            aTCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCGCGCCAGTGGCGCTTGTGCTTGCGGTGGCCATAATGGTGACCACGGTCCCAg                                      <  2:617078/150‑1 (MQ=255)                                                                                                             tCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCGCGCCAGTGGCGCTTGTGCTTGCGGTGGCCATAATGGTGa                                                  <  2:1081184/137‑1 (MQ=255)                                                                                                             tCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCGCGCCAGTGGCGCTTGTGCTTGCGGTGGCCATAATGGTGa                                                  >  1:1081184/1‑137 (MQ=255)                                                                                                              ccTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCGCGCCAGTGGCGCTTGTGCTTGCGGTGGCCATAATGGTGACCACGGTCCCAGTg                                    >  2:154076/1‑150 (MQ=255)                                                                                                               cTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCGCGCCAGTGGCGCTTGTGCTTGCGGTGGCCATAATGGTGACCACGGTCCCAGTga                                   <  2:719389/150‑1 (MQ=255)                                                                                                                 gTCCGGCCTCGTGCTGGAGCGGCAGGCAT‑AAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCGCGCCAGTGGCGCTTGTGCTTGCGGTGGCCATAATGGTGACCACGGTCCCAGTgacga                                <  1:453961/150‑1 (MQ=255)                                                                                                                     ggCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGc                                                                                                 <  2:112086/82‑1 (MQ=255)                                                                                                                     ggCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGc                                                                                                 >  1:112086/1‑82 (MQ=255)                                                                                                                             gCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCGCGCCAGTGGCGCTTGTGCTTGCGGTGGCCATAATGGTGACCACGGTCCCAGTGACGACGaccgtcgtc                     <  1:367666/150‑1 (MQ=255)                                                                                                                               tGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCGCGCCAGTGGCGCTTGTGCTTGCGGTGGCCATAATGGTGACCACGGTc                                          <  2:366439/127‑1 (MQ=255)                                                                                                                               tGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCGCGCCAGTGGCGCTTGTGCTTGCGGTGGCCATAATGGTGACCACGGTc                                          >  1:366439/1‑127 (MQ=255)                                                                                                                                          gcaTAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAg                                                                                            <  2:293143/66‑1 (MQ=255)                                                                                                                                          gcaTAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAg                                                                                            >  1:293143/1‑66 (MQ=255)                                                                                                                                          gcaTAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCGCGCCAGTGGCGCTTGTGCTTGCGGTGGCCATAATGGTGACCa                                               <  2:409255/111‑1 (MQ=255)                                                                                                                                          gcaTAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCGCGCCAGTGGCGCTTGTGCTTGCGGTGGCCATAATGGTGACCa                                               >  1:409255/1‑111 (MQ=255)                                                                                                                                          gcaTAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCGCGCCAGTGGCGCTTGTGCTTGCGGTGGCCATAATGGTGACCACGGTCCCAGTGACGACGGTCGTCGTCGTAGCCGcgacga        >  1:918748/1‑150 (MQ=255)                                                                                                                                            aTAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTCTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCGCGCCAGTGGCGCTTCTTCTTGCGGTGGCCATAATGGTGACCACGGTCCCAGTGACGCCGGACGTCGTCGTAGCCGcgacgacc      >  2:306906/1‑148 (MQ=255)                                                                                                                                             tAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCGCGCCAGTGGCGCTTGTGCTTGCGGTGGCCATAATGGTGACCACGGTCCCAGTGACGACGGTCGTCGTCGTAGCCGCGACGATAg     >  1:238464/1‑150 (MQ=255)                                                                                                                                                aaaaGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCGCGCCAGTGGCGCTTGTGCTTGCGGTGGCCATAATGGTGACCACGGTCCCAGTGACGACGGTCGTCGTAGTAGCCGCGACGATAgcgg  >  1:413625/1‑150 (MQ=255)                                                                                                                                                |                                                                                                                                                      TGTACCGTCCGGGCGAATCGGACGCATGCGCGGCAGGCACGGTGGTGCAGGTGTTCATCGAGCGCGCCAGTGGCCGGCCTGTGGCGTTGCCAGAGGCGCTGCAGGTGATCCTGTCCGGCCTCGTGCTGGAGCGGCAGGCATAAAAAAGCCCCGCTGGCAGGGGCGGGGCTTTTGTTGCCGGGGGCAGGGCCCTCAGGCGTTAGTCGCGCCAGTGGCGCTTGTGCTTGCGGTGGCCATAATGGTGACCACGGTCCCAGTGACGACGGTCGTCGTCGTAGCCGCGACGATAGCGG  >  NC_002947/309154‑309446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.