| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 883865 | 19 (0.420) | 9 (0.260) | 9/200 | 2.7 | 31.9% | intergenic (+100/‑228) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator |
| ? | NC_002947 | = 883875 | 24 (0.710) | intergenic (+110/‑218) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator | |||||
CAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAG‑GTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATC > NC_002947/883730‑884013 | cAGCCCGCAGCGCTGCGTCAGTAGGCTACGCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacctgtag < 1:834‑M1/150‑15 (MQ=255) gCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAG‑GTTCCGCGgtagga > 1:67331‑M2/1‑144 (MQ=255) cAGTCGGGTCTTCGCTAAGCTCAAATCACTCATAGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAG‑GTTCCGCGgtaggagcgggttcacccgcga > 2:493870‑M2/1‑128 (MQ=255) cGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGGGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGGGAACCCGCTCCTACAG‑GTTCCGCGgtaggagcgggttcacccgcgaagag > 2:350927‑M2/1‑124 (MQ=255) gggTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacctgtaggagcgg < 2:361691‑M1/133‑21 (MQ=255) gggTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacctgtaggagcgg > 1:361691‑M1/1‑113 (MQ=255) gCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacctgtaggagcgg > 2:388521‑M1/1‑105 (MQ=255) gCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacctgtaggagcgg < 1:388521‑M1/125‑21 (MQ=255) cTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAAC‑CTgtaggagcgggttcacccgcgaa > 1:942578‑M2/1‑100 (MQ=255) cTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAAC‑CTgtaggagcgggttcacccgcgaa < 2:942578‑M2/123‑24 (MQ=255) cTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAG‑GTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAAcctcct > 2:642176/1‑150 (MQ=255) ccAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCTGCTCCTACAG‑TTTCCGCGGTAGGAGCGGGTTCACCCGCGCAGAGGCCGGGCCAGGCAATCAACCTCCTGAATACCTCCCCAAAccc > 2:1025016/1‑150 (MQ=38) ccAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacctgtaggagcgg > 1:292784‑M1/1‑72 (MQ=255) ccAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacctgtaggagcgg < 2:292784‑M1/92‑21 (MQ=255) gaaacgCCCCGGCGAGCCGGGGCGTT‑CTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAG‑GTTCCGCGgtaggagcgg < 2:709420‑M2/87‑11 (MQ=255) gaaacgCCCCGGCGAGCCGGGGCGTT‑CTATGTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAG‑GTTCCGCGgtaggagcgg > 1:709420‑M2/3‑79 (MQ=255) gCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacctgtaggagcggg > 2:783767‑M1/1‑65 (MQ=255) gCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacctgtaggagcggg < 1:783767‑M1/86‑22 (MQ=255) gCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAG‑GTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGcccc > 1:1115784/1‑150 (MQ=255) ccccGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAG‑GTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCaa > 2:872939/1‑118 (MQ=255) ccccGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAG‑GTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCaa < 1:872939/118‑1 (MQ=255) cGGCCTCTTCGCGGGTGAACCCGCTCCTACAG‑GTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGcc < 2:1107165/113‑1 (MQ=255) cGGCCTCTTCGCGGGTGAACCCGCTCCTACAG‑GTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGcc > 1:1107165/1‑113 (MQ=255) gCCTCTTCGCGGGTGAACCCGCTCCTACAG‑GTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCaaa > 1:950961/1‑103 (MQ=255) gCCTCTTCGCGGGTGAACCCGCTCCTACAG‑GTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCaaa < 2:950961/103‑1 (MQ=255) ctctTCGCGGGTGAACCCGCTCCTACcgcggaacctgtaggagcgggttcccccgcgaagaggccgggtcaggaaatagaaaccccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccg > 2:350927‑M1/1‑26 (MQ=255) ctTCGCGGGAGAACCCGCTCCTACCG‑GTTCCGCGCTATGAGCGGGTTCACCCGCGAAGAGGCCGGGCACGACAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCACCCATGTTGCTTTTTGTTGCAGTCtt > 1:454460/1‑150 (MQ=255) ttCGCGGGTGAACCCGCTCCTACaggttccgcggtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcag < 2:942578‑M1/123‑101 (MQ=255) ttCGCGGGTGAACCCGCTCCTACaggttccgcggtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcag > 1:942578‑M1/1‑23 (MQ=255) tCGCGGGTGAACCCGCTCCTACcgcggaacctgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggctatgagtgatttgagcttagcgaagacccgactg > 2:493870‑M1/1‑22 (MQ=255) gggTGAACCCGCTCCTACAG‑GTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCcgc > 1:748952/1‑150 (MQ=255) cccGCTCCTACAG‑GTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggc > 2:783767‑M2/1‑21 (MQ=255) cccGCTCCTACAG‑GTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggc < 1:783767‑M2/86‑66 (MQ=255) gcGCTCCTACAG‑GTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTg > 1:1076382/2‑150 (MQ=255) ccGCTCCTACcgcggaacctgtaggagcgggttcacccgcgaagaggccgggtcaggacatagaacgccccggctcgccggggcgtttc > 1:709420‑M1/1‑10 (MQ=255) ccGCTCCTACcgcggaacctgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaacgccccggctcgccggggcgtttc < 2:709420‑M1/89‑80 (MQ=255) ccGCTCCTACAG‑GTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaataccc < 2:361691‑M2/133‑114 (MQ=255) ccGCTCCTACAG‑GTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaataccc > 1:361691‑M2/1‑20 (MQ=255) ccGCTCCTACAG‑GTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagc > 2:388521‑M2/1‑20 (MQ=255) ccGCTCCTACAG‑GTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagc < 1:388521‑M2/125‑106 (MQ=255) ccGCTCCTACAG‑GTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctgg > 1:292784‑M2/1‑20 (MQ=255) ccGCTCCTACAG‑GTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctgg < 2:292784‑M2/92‑73 (MQ=255) ccGCTCCTACAG‑GTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAGTACCtctc < 2:738657/81‑1 (MQ=255) ccGCTCCTACAG‑GTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAGTACCtctc > 1:738657/1‑81 (MQ=255) ccGCTCCTACAG‑GTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCtctc > 1:738584/1‑81 (MQ=255) ccGCTCCTACAG‑GTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCtctc < 2:738584/81‑1 (MQ=255) ccGCTCCTACAG‑GTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTg > 2:1124006/1‑150 (MQ=255) gCTCCTACAG‑GTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTgcg < 1:642176/150‑1 (MQ=255) tCCTACcgcggaacctgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgctgcgggc > 1:67331‑M1/1‑6 (MQ=255) cTACAG‑GTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgcgtagcctactgacgcagcgctgcgggctg < 1:834‑M2/150‑137 (MQ=255) aCAG‑GTTCCGCGGTAGTAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAAGCAACCTCCTGAATACCTCTACAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCcatc > 2:495725/1‑150 (MQ=255) | CAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAG‑GTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATC > NC_002947/883730‑884013 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |