New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4852498	26 (0.580)	6 (0.190)	6/182	3.3	20.7%	intergenic (‑124/+173)	recR/ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
	?	NC_002947	= 4852557	28 (0.900)					intergenic (‑183/+114)	recR/ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
Rejected: Coverage evenness skew score above cutoff.

GGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCGGCGGCAG  >  NC_002947/4852427‑4852700                                                                                                                                   |                                                                                                                                                  ggCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGc                                                                                                                                <  1:6594/150‑1 (MQ=255)                                                       ccTTGTGTCGCGAGAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCCCCCACAAAAAAACAGACCGCA‑ACTGGGTTGAACTCTCCGC‑AACAAAAAcc                                                                        >  1:621716/1‑150 (MQ=38)                                                         ttGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCa                                                                                                              <  1:1029691/112‑1 (MQ=255)                                                         ttGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCa                                                                                                              >  2:1029691/1‑112 (MQ=255)                                                            tgtCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCAc                                                                   >  1:888760/1‑150 (MQ=255)                                                                gcgAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACtgtt                                                               <  2:888760/150‑1 (MQ=255)                                                                gcgAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACtgtt                                                               >  2:321434/1‑150 (MQ=255)                                                                gcgAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACtgtt                                                               >  2:622851/1‑150 (MQ=255)                                                                  gAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGC‑AAAAAAACCCGCCACtgtttt                                                             >  2:604458/1‑148 (MQ=255)                                                                  gAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGC‑AAAAAAAACCGc                                                                      <  2:805473/141‑1 (MQ=255)                                                                  gAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGC‑AAAAAAAACCGc                                                                      >  1:805473/1‑141 (MQ=255)                                                                       ggCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCC‑ACTGGGTTGAAATGTCCGG‑AAAAAAAACCGCCACGGTTGTCAgcg                                                        >  2:456245/1‑150 (MQ=255)                                                                          tGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAgcggcg                                                     >  2:642566/1‑150 (MQ=255)                                                                          tGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAgcggcg                                                     >  2:1061979/1‑150 (MQ=255)                                                                             gAAGCAGCACCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGAGACAAAAGGACGCTCCCAGAAAAAAGAAGAGCGCA‑AATGGGTTGAATGATACGC‑AATAAAACCCGCGAGTGTTGTCAacgaacgtt                                                  >  2:488872/1‑144 (MQ=25)                                                                                gcagcCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGC‑aaaaaaaa                                                                          <  1:716567/123‑1 (MQ=255)                                                                                gcagcCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGC‑aaaaaaaa                                                                          >  2:716567/1‑123 (MQ=255)                                                                                    ccccGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTcgc                                                                                                                                          >  1:397750/1‑57 (MQ=255)                                                                                    ccccGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTcgc                                                                                                                                          <  2:397750/57‑1 (MQ=255)                                                                                    ccccGGCACTCTGTGCTGCGAAGCTGAAATCCCCCAGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGCAAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGt                                            >  1:838600/1‑150 (MQ=39)                                                                                      ccGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCa                                                                                                              >  1:678094/1‑83 (MQ=255)                                                                                      ccGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCa                                                                                                              <  2:678094/83‑1 (MQ=255)                                                                                                  gctgcGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTa                             <  1:1061979/150‑1 (MQ=255)                                                                                                    tgcGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGA‑CGCACACGTGTTTGAAATCTCCGC‑AAAAAAAAACGCGACTGTTGACATTGGCGGTTTTGAGTATCGCAATGCCCTTAGa                           >  1:539206/1‑150 (MQ=25)                                                                                                          taggAAATCCCGGGGCCTCTTCGCGCACCTTACGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCa                     <  2:621716/147‑1 (MQ=255)                                                                                                             gAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGc                                                                                   <  1:666001/86‑1 (MQ=255)                                                                                                             gAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGc                                                                                   >  2:666001/1‑86 (MQ=255)                                                                                                                   ccGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGtttt                                                <  2:197449/114‑1 (MQ=255)                                                                                                                   ccGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGtttt                                                >  1:197449/1‑114 (MQ=255)                                                                                                                        gCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCcggc       >  2:379497/1‑150 (MQ=255)                                                                                                                        gCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCcggc       >  2:929093/1‑150 (MQ=255)                                                                                                                          cGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTCTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCcggcgg     >  1:245349/1‑150 (MQ=255)                                                                                                                           gCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGC‑AAACAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCggcggc    <  1:456245/150‑1 (MQ=255)                                                                                                                           gCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCggcggc    >  1:748494/1‑150 (MQ=255)                                                                                                                             ttCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCGGCGGCAg  <  1:929093/150‑1 (MQ=255)                                                                                                                                   |                                                                                                                                                  GGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCA‑ACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCGGCGGCAG  >  NC_002947/4852427‑4852700

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.