New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1844179	0 (0.000)	35 (0.960)	31/262	0.3	63.6%	coding (657/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	2177745 =	40 (1.090)					intergenic (+103/‑63)	PP_5485/PP_1931	GNAT family acetyltransferase/hypothetical protein

TGGTTTCCAGGTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTG‑GGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1844043‑1844179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCACCGATGAAAACCC  >  NC_002947/2177745‑2177893                                                                                                                                                                                                                                                                                                 TGGTTTCCAGGTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGATTTCGGCCATGGGGTTGAT‑TCGTGTGGCCAGCGCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAA                                                                                                                                          >  2:790108/1‑150 TGGTTTCAAGGTTCTGGCGCACGTCTTCGGTGGCCGGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTG‑GGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAA                                                                                                                                          >  1:305703/1‑150       CCACGTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTG‑GGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCC                                                                                                                                    >  2:35369/1‑150           GTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTG‑GGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCG                                                                                                                                >  2:729497/1‑150                         CTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTG‑GGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTC                                                                                                                  <  1:898912/150‑1                         CTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTG‑GGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTC                                                                                                                  <  1:50542/150‑1                                 GCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTG‑GGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTC                                                                                                          <  1:35369/150‑1                                  CCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTG‑GGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCG                                                                                                         >  2:219637/1‑150                                       TCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTG‑GGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACC                                                                                                    >  1:142425/1‑150                                                   TGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTG‑GGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATC                                                                                        <  1:455371/150‑1                                                   TGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTG‑GGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATC                                                                                        <  1:455407/150‑1                                                      AGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTG‑GGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATG                                                                                     >  2:156356/1‑150                                                       GTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTG‑GGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGA                                                                                    <  2:834362/150‑1                                                        TTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTG‑GGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAA                                                                                   <  2:142425/150‑1                                                            TCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTG‑GGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAGTCATGAAGCGA                                                                               <  2:479080/150‑1                                                              GTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTG‑GGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATT                                                                             <  1:219637/150‑1                                                               TGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTG‑GGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTC                                                                            >  1:862072/1‑150                                                                         GCAGGGTTTCGGCCATGCGGTTGATGCCGTG‑GGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACC                                                                                                                     >  2:370241/1‑99                                                                         GCAGGGTTTCGGCCATGCGGTTGATGCCGTG‑GGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACC                                                                                                                     <  1:370241/99‑1                                                                               TTTCGGCCATGCGGTTGATGCCGTG‑GGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTC                                                            <  1:790108/150‑1                                                                                         GCGGTTGATGCCGTG‑GGCCAGTTCGTCCAGCTACTGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGT                                                  >  1:672899/1‑150                                                                                           GGTTGATGCCGTG‑GGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAGCCTTCTGGTCGTCGTGACCGTGGGGACAACCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTA                                                >  1:630594/1‑150                                                                                                ATGCCGTG‑GGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTG                                           >  1:466439/1‑150                                                                                                         GGCCAGTTCGTCCAGCTCATGGCTGCCAATGCTTTAGGTTTTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGA                                   <  2:305703/150‑1                                                                                                           CCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACTTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGT                                 >  2:658738/1‑150                                                                                                            CAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATACAGCTATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTG                                >  1:55961/1‑150                                                                                                                   TCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGAC                         >  2:435371/1‑150                                                                                                                       GCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAG                                                    <  1:320911/119‑1                                                                                                                       GCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAG                                                    >  2:320911/1‑119                                                                                                                         TCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTAC                   >  1:114347/1‑150                                                                                                                         TCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTAC                   >  1:629230/1‑150                                                                                                                               CTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCACC             <  1:772230/150‑1                                                                                                                                TGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCACCG            >  2:169469/1‑150                                                                                                                                  CCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCACCGAT          <  2:629230/150‑1                                                                                                                                    CATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCACCGATGA        >  1:511099/1‑150                                                                                                                                       GGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCACCGATGAAAA     <  1:133954/150‑1                                                                                                                                          CCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCACCGATGAAAACCC  >  1:878863/1‑150                                                                                                                                                                                                                                                                                                 TGGTTTCCAGGTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTG‑GGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1844043‑1844179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCACCGATGAAAACCC  >  NC_002947/2177745‑2177893

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.