| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4893624 | 30 (0.800) | 8 (0.270) | 8/216 | 2.5 | 22.2% | intergenic (+54/‑154) | pyk/PP_4302 | pyruvate kinase/urea transporter |
| ? | NC_002947 | = 4893649 | 32 (1.060) | intergenic (+79/‑129) | pyk/PP_4302 | pyruvate kinase/urea transporter | |||||
ACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACT > NC_002947/4893493‑4893772 | acGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGa > 1:498670/1‑150 (MQ=255) cGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGaa < 1:552918/150‑1 (MQ=255) aTCACCGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGTAATGCAGTcc > 1:151604‑M2/1‑148 (MQ=255) cACCGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccct < 1:230382‑M2/150‑5 (MQ=255) gCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgg > 1:79143‑M2/1‑142 (MQ=255) gCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagc < 2:142756‑M2/150‑13 (MQ=255) gCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATATGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagc > 1:151412‑M2/1‑138 (MQ=255) tGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGactgcattcccttgtgccagcgtggccctgtgggagcggc < 1:626526‑M1/150‑41 (MQ=255) tGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggc > 2:230382‑M2/1‑135 (MQ=255) cGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGactgcattcccttgtgccagcgtggccctgtgggagcggccttgtgt < 1:320036‑M1/150‑48 (MQ=255) gCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCa < 1:410232/124‑1 (MQ=255) gCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCa > 2:410232/1‑124 (MQ=255) aCTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGactgcattcccttgtgccagcgtggccctgtgggagc > 2:310179‑M1/1‑87 (MQ=255) aCTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGactgcattcccttgtgccagcgtggccctgtgggagc < 1:310179‑M1/124‑38 (MQ=255) cTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGactgcattcccttgtgccagcgtggccctgtgggag < 1:558811‑M1/122‑37 (MQ=255) cTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGactgcattcccttgtgccagcgtggacctgtgggag > 2:558811‑M1/1‑86 (MQ=255) tAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAg > 1:68505/1‑150 (MQ=255) cGCTGCGGATCGAGACTTTGATCTGAGCATGCCGGGGGCGCGGTGCGCACCTTTCGCCAGACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGccctc < 2:444920/150‑1 (MQ=39) gCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGactgcattcccttgtgccagcgtggccctgtggga > 2:621643‑M1/1‑79 (MQ=255) gCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGactgcattcccttgtgccagcgtggccctgtggga < 1:621643‑M1/114‑36 (MQ=255) tGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGccctccct < 1:142756/150‑1 (MQ=255) tGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGccctccct < 1:335007/150‑1 (MQ=255) aTCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGAGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATa > 2:244537/1‑150 (MQ=255) agaTTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACcgc < 2:890866/150‑1 (MQ=255) tGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTg > 1:690095/1‑125 (MQ=255) tGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTg < 2:690095/125‑1 (MQ=255) gggCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGa < 2:820931/150‑1 (MQ=255) gcgTTGCGCCCCTTTCGCGACACAAGGGCGCTCCCACAAGAACACGCTGGCACAAGGGAATGCAGTCCGTGGGGGAGCGGCCTTGTGTTGCGATTGGAGGGCAAAGCCCTCACTTAATACCGCTCGACCAGACCGCGGAAAACCGAGGcc > 1:421971/1‑150 (MQ=255) gcgTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGcc < 1:244537/150‑1 (MQ=255) tGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCaaa < 2:68505/150‑1 (MQ=255) gcCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAg < 1:563983/92‑1 (MQ=255) gcCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAg > 2:563983/1‑92 (MQ=255) cccTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGc > 2:873361/1‑150 (MQ=255) tCGCGACACAAGGCCGCTCCCACAGGGactgcattcccttgtgccagcgtggccctgtgggagcggcctt < 1:478845‑M1/70‑44 (MQ=255) tCGCGACACAAGGCCGCTCCCACAGGGactgcattcccttgtgccagcgtggccctgtgggagcggcctt > 2:478845‑M1/1‑27 (MQ=255) acacAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccg < 1:320036‑M2/150‑104 (MQ=255) aaGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcgcga > 2:478845‑M2/1‑43 (MQ=255) aaGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcgcga < 1:478845‑M2/70‑28 (MQ=255) ggCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATc > 2:203015/1‑150 (MQ=255) gCCGCTCCCACAGGGactgcattcccttgtgccagcgtggccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccgaaaggca > 2:230382‑M1/1‑15 (MQ=255) gCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccgaaaggca < 1:626526‑M2/150‑111 (MQ=255) gCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTAccc < 1:347228/104‑1 (MQ=255) gCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTAccc > 2:347228/1‑104 (MQ=255) gCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCa > 1:34782/1‑150 (MQ=255) cGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGTAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAAc < 1:873361/150‑1 (MQ=255) cGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAAc > 2:282218/1‑150 (MQ=255) gCTCCCACAGGGactgcattcccttgtgccagcgtggccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcatatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccgaaaggcacgc > 1:151412‑M1/1‑12 (MQ=255) gCTCCCACAGGGactgcattcccttgtgccagcgtggccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccgaaaggcacgc < 2:142756‑M1/150‑139 (MQ=255) gCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagt < 1:310179‑M2/124‑88 (MQ=255) gCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagt > 2:310179‑M2/1‑37 (MQ=255) cTCCCACAGGTCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttag > 2:558811‑M2/1‑36 (MQ=255) cTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttag < 1:558811‑M2/122‑87 (MQ=255) tCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagc > 2:621643‑M2/1‑35 (MQ=255) tCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagc < 1:621643‑M2/114‑80 (MQ=255) ccACAGGGactgcattcccttgtgccagcgtggccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccgaaaggcacgccagc > 1:79143‑M1/1‑8 (MQ=255) ccACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCa < 2:361864/150‑1 (MQ=255) cacaGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGa > 2:552254/1‑64 (MQ=255) cacaGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGa < 1:552254/64‑1 (MQ=255) cacaGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCac > 1:480299/1‑150 (MQ=255) aGGGactgcattcccttgtgccagcgtggccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccgaaaggcacgccagcggtg < 1:230382‑M1/150‑147 (MQ=255) ggactgcattaccttgtgccagcgtggccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccgaaaggcacgccagcggtgat > 1:151604‑M1/1‑2 (MQ=255) ggCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCactgact < 1:282218/150‑1 (MQ=255) | ACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACT > NC_002947/4893493‑4893772 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |