| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1844176 = | 0 (0.000) | 32 (0.880) | 27/260 | 0.5 | 72.7% | coding (660/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | = 2179419 | 24 (0.660) | intergenic (+175/+93) | PP_1931/PP_5486 | hypothetical protein/hypothetical protein | |||||
ATGCCCAAAAGACCTCAAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCACCCCTCATCTCCTGAGTTCGAGCCTTCTCGGATTCGCTTAAGCACGATCTCG > NC_002947/2179271‑2179566 | aTGCCCAAAAGACCTCAAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGg < 2:613861‑M2/150‑2 (MQ=255)aTGCCCAAAAGACCTCAAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGg < 2:537190‑M2/150‑2 (MQ=255)aTGCCCAAAAGACCTCAAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGg < 1:216019‑M2/150‑2 (MQ=255)aTGCCCAAAAGACCTCAAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGg < 1:472496‑M2/150‑2 (MQ=255)aTGCCCAAAAGACCTCAAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCGAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGg < 2:613858‑M2/150‑2 (MQ=255) cTCAAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGGGTCGa > 1:432126/1‑142 (MQ=255) cTCAAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGGGTCGa < 2:432126/142‑1 (MQ=255) tCAAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGGGTCGATAGcggccg > 2:635636/1‑150 (MQ=255) aaGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGggtcggcaggcgttctt > 1:613861‑M2/1‑133 (MQ=255) aaGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGggtcggcaggcgttctt > 1:613858‑M2/1‑133 (MQ=255) aaCGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGGGTCGATAGCGGCCGGCCGa < 2:669166/150‑1 (MQ=255) aaCGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTCCGCCCTTCAACGCACTTCGAGCGTGTGCTGACAG‑TCTGggtcgtcagccgttcttcga > 2:266983‑M2/1‑130 (MQ=255) cTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGggtaggcaggcgttcttcgaggagg > 2:472496‑M2/1‑125 (MQ=255) cTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGGGTCGATAGCGGCCGGCCGatcatc > 2:130058/1‑150 (MQ=255) cacaTCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGGGTCGATAGCGGCCGGCCGATCATCAg < 2:600625/150‑1 (MQ=255) acaTCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCATGTTGGCAAGCCTCTCTAGATCCCTGGGCCCTTCAACGCATTTCGCGTGTTTTGTCACAG‑CCTGggtcggcaggcgttcttcgaggtggccg < 1:241050‑M2/150‑29 (MQ=255) cGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGGGTCGATAGCGGCCGGCCGATCATCAGCGaaa < 1:537190/150‑1 (MQ=255) cgcCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgat > 1:521056‑M2/1‑109 (MQ=255) ccAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgac < 2:465256‑M2/150‑46 (MQ=255) aCGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgt < 2:827362‑M2/150‑51 (MQ=255) cGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCg < 1:881153/150‑1 (MQ=255) ggCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgc < 2:555578‑M2/150‑53 (MQ=255) tGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGcc < 1:838421/150‑1 (MQ=255) gAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGggtcg < 2:354374‑M2/95‑6 (MQ=255) gAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGggtcg > 1:354374‑M2/1‑90 (MQ=255) cACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATc > 2:77583/1‑150 (MQ=255) gCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGAt < 2:505368/150‑1 (MQ=255) tttCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgac > 2:108387‑M2/1‑74 (MQ=255) tttCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgac < 1:108387‑M2/119‑46 (MQ=255) cTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgcttgatgcgttcgatggggtcgttgatg > 1:465256‑M2/1‑71 (MQ=255) cAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgcttgatgcgttcgatggggtcgttgatggtgcg < 2:45463‑M2/150‑85 (MQ=255) aGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgcttgatgcgttcgatggggtcgttgatggtgcgg < 1:793239‑M2/150‑86 (MQ=255) tGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAgg > 1:823795/1‑150 (MQ=255) gCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgcttgatgcgttcgatggggtcgttgatggtgcggctcatg < 1:645290‑M2/150‑92 (MQ=255) aaGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGAt > 2:550997/1‑150 (MQ=255) aGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgat > 2:1664‑M2/1‑56 (MQ=255) aGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgat < 1:1664‑M2/97‑42 (MQ=255) gCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGtgtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgcttgatgcgttcgatggggtcgttgatggtgcggctcatgcgca > 2:315020‑M2/1‑55 (MQ=255) ccTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCAc > 2:601099/1‑150 (MQ=255) ctctctAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtggttgatgcgttcgatggggtcgttgatggtgcggctcatgcgcagc < 1:55317‑M2/150‑98 (MQ=255) ctctAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAgg > 1:764146/1‑140 (MQ=255) ctctAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAgg < 2:764146/140‑1 (MQ=255) tAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCACCCCTCa > 2:624510/1‑150 (MQ=255) aGATCCCTGCGCCCTTCAACGCATTTCGCGTGTCGTCACACAG‑CCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGACGAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCACCCCTCAt > 1:532089/1‑150 (MQ=255) gATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgcttgatgcgttcgatggggtcgttgatggtgcggctcatgcgcagcgccaaca < 2:730003‑M2/150‑105 (MQ=255) aTCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgcttgatgcgttcgatggggtcgttgatggtgcggctcatgcgcagcgccaacag > 2:645290‑M2/1‑45 (MQ=255) tCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCACCCCTCAtctc < 1:130058/150‑1 (MQ=255) cccTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgcttgatgcgttcgctggcgtcgttgatggtgcgtctcatgcgcagcgccaacaggc > 2:216019‑M2/1‑43 (MQ=255) tGCGCCCTTCAACGCATTTCGCGTGTTTT‑ACCGAGATCTAGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGACGGGGTTTCTAGCAGAGGCGATCACCCCTCATCTCCTGa < 2:532089/150‑1 (MQ=255) ccTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGggtcggcaggcgttcttcgaggtggccgtcctgagctgattgaccgcgtgcttgatgcgttcgatggggtcgttgatggtg < 2:230181‑M2/116‑82 (MQ=255) ccTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGggtcggcaggcgttcttcgaggtggccgtcctgagctgattgaccgcgtgcttgatgcgttcgatggggtcgttgatggtg > 1:230181‑M2/1‑35 (MQ=255) ttCAACGCATTTCGCGTGTTTTCACACAG‑CCTGggtcggcaggcgttcttcgaggtg < 2:45438‑M2/57‑25 (MQ=255) ttCAACGCATTTCGCGTGTTTTCACACAG‑CCTGggtcggcaggcgttcttcgaggtg > 1:45438‑M2/1‑33 (MQ=255) gCATTTCGCGTGTTTTCACACAG‑CCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgcttgatgcgttcgatggggtcgttgatggtgcggctcatgcgcagcgccaacaggccgctgagtgccaggca < 1:555481‑M2/150‑124 (MQ=255) cATCTCTCGTCTTTTCATATAG‑CCTGTGTCGATACCGGCCGGCTGATCATCAGCGTAAAGGCTCTCCTCGTTTTCCGCAAATGCCCGACCTTATTGATGGTGTTTCTAGCATAGGCGATCACCCCTCATCTCCTGAGTTCGAGCCTtctc < 2:285731/150‑1 (MQ=255) gcgTGTTTTCACACAG‑CCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGATGCGATCACCCCTCATCTCCTGAGTTCGAGCCTTCTCgagatc > 1:285731/1‑145 (MQ=255) gtgtTTTCACACAG‑CCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCACCCCTCATCTCCTGAGTTCGAGCCTTCTCGGATTCGc < 1:77583/150‑1 (MQ=255) ttttCACACAG‑CCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgcttgatgcgttcgatggggtcgttgatggtgcggctcatgcgcagcgctaacaggccgctgcgtgccaggcaggcgaggatgag < 2:834744‑M2/150‑136 (MQ=255) ttttCACACAG‑CCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgcttgatgcgttcgatggggtcgttgatggtgcggctcatgcgcagcgccaacaggccgctgagtgccaggcaggcgaggatcag < 2:834764‑M2/150‑136 (MQ=255) acacaG‑CCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCACCCCTCATCTCCTGAGTTCGAGCCTTCTCGGATTCGCTTAAGCAc < 1:635636/150‑1 (MQ=255) aG‑CCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgcttgatgcgttcgatggggtcgttgatggtgcggctcatgcgcagcgccaacaggccgctgagtgccaggcaggcgaggatcagcaacaggct > 1:834764‑M2/1‑6 (MQ=255) aG‑CCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgcttgatgcgttcgatggggtcgttgatggtgcggctcatgcgcagcgccaacaggccgctgagtgccaggcaggcgaggatcagcaacaggct > 1:834744‑M2/1‑6 (MQ=255) cTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgcttgatgcgttcgatggggtcgttgatggtgcggctcatgcgcagcgccaacaggccgctgagtgccaggcaggcgaggatcagcaacaggctggt > 2:793239‑M2/1‑3 (MQ=255) | ATGCCCAAAAGACCTCAAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAG‑CCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCACCCCTCATCTCCTGAGTTCGAGCCTTCTCGGATTCGCTTAAGCACGATCTCG > NC_002947/2179271‑2179566 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |