| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 499197 = | 37 (0.980) | 9 (0.290) | 9/222 | 2.3 | 23.0% | intergenic (+38/‑258) | uhpA/PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein |
| ? | NC_002947 | 499284 = | 30 (0.970) | intergenic (+125/‑171) | uhpA/PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein | |||||
ATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTTGCCTACGCAGTC > NC_002947/499159‑499433 | atTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGc > 2:565513/1‑150 (MQ=255) cGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTc < 1:565513/150‑1 (MQ=255) gACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTcc > 1:45949/1‑150 (MQ=255) ccGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATcc > 1:400873/1‑150 (MQ=255) ccGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATcc > 2:163274/1‑150 (MQ=255) gAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCtt < 2:400873/150‑1 (MQ=255) gAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGACACATGCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCtt < 1:752080/150‑1 (MQ=255) cTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCTTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAg < 2:104641/150‑1 (MQ=255) cGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCGTGCAGCAGATCGGCGTT‑GCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAgggatc > 2:482925/1‑147 (MQ=255) gAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATATATCAGAATCAACAACGCCCCACACGGGGCCGCCGCCGCGCACAG‑ATTGGGTGGGTGTCGCGTAGGGGCATTCCAATCCCGCCATCCTTGTAGGGCGAt > 2:561732/1‑150 (MQ=255) gCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATccc > 1:796145/1‑150 (MQ=255) cTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGtt < 1:481618/102‑1 (MQ=255) cTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGtt > 2:481618/1‑102 (MQ=255) gagcgggcatgcccgcgaagaggccggctcagccatagagatcagcaggccaggcccgttcgcgggcatgcccgctcccacaG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAAt > 1:422494‑M2/83‑150 (MQ=255) CGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCtt > 1:165818‑M1/1‑150 (MQ=255) ggcatgcccgcgaagaggccggctcagccatagagatcagcaggccaggcccgttcgcgggcatgcccgctcccacaG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTcc > 2:186110‑M2/78‑150 (MQ=255) gcatgcccgcgaagaggccggctcagccatagagatcagcaggccaggcccgttcgcgggcatgcccgctcccacaG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCa < 2:422494‑M2/74‑1 (MQ=255) cgcgaagaggccggctcagccatagagatcagcaggccaggcccgttcgcgggcatgcccgctcccacataG‑GTTTCGTGGTTGGCTCGCAACGGCATTCCAATCCCGCCATACTTGTAGGGCGATCCCTACAACAAATCTTCCATCCgg > 2:574121‑M2/72‑150 (MQ=255) cccgcgaagaggccggctcagccatagagatcagcaggccaggcccgttcgcgggcatgcccgctcccacaG‑GTTTCGTGGTTGGCTCGCAAggg < 1:55704‑M2/24‑1 (MQ=255) cccgcgaagaggccggctcagccatagagatcagcaggccaggcccgttcgcgggcatgcccgctcccacaG‑GTTTCGTGGTTGGCTCGCAAggg > 2:55704‑M2/72‑95 (MQ=255) ccgcgaagaggccggctcagccatagagatcagcaggccaggcccgttcgcgggcatgcccgctcccacaG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAggg > 2:517167‑M2/71‑121 (MQ=255) ccgcgaagaggccggctcagccatagagatcagcaggccaggcccgttcgcgggcatgcccgctcccacaG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAggg < 1:517167‑M2/51‑1 (MQ=255) CGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGgat < 1:400758‑M1/150‑1 (MQ=255) gaggggCGTGGGCTGCTGATCTCTATGGCTGGGCCGGCCTCTTCGCGGGCATGTGCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCTATTCTTGTAGTGCGATCCCTACAACAAATCTTCCATCCGGatgatg < 2:309067/147‑1 (MQ=255) AACGGGCGTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGatgatg > 2:496463‑M1/1‑150 (MQ=255) tggcctgCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATtctc > 1:315956/1‑150 (MQ=255) gcctgCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATtctctc < 2:754729/150‑1 (MQ=255) tGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTa < 2:857851/100‑1 (MQ=255) tGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTa > 1:857851/1‑100 (MQ=255) gCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATtct < 2:830801/130‑1 (MQ=255) gCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATtct > 1:830801/1‑130 (MQ=255) cTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTc < 2:133905/148‑1 (MQ=255) cTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATGTTc > 1:133905/1‑148 (MQ=255) gccaggcccgttcgcgggcatgcccgctcccacaG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGgcg < 1:186110‑M2/116‑1 (MQ=255) gCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCgg > 2:347242/1‑146 (MQ=255) gCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCgg < 1:347242/146‑1 (MQ=255) gCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGc < 2:45949/150‑1 (MQ=255) gCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGc > 2:74988/1‑150 (MQ=255) ctctTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCa > 2:172210/1‑123 (MQ=255) ctctTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCa < 1:172210/123‑1 (MQ=255) ctctTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGa < 1:771169/133‑1 (MQ=255) ctctTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGa > 2:771169/1‑133 (MQ=255) gggcatgcccgctcccacaG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTa < 2:796145‑M2/131‑1 (MQ=255) cgctcccacaG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTTGc < 2:321024‑M2/140‑1 (MQ=255) ccacaG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTTGCCTACg > 1:128642‑M2/6‑150 (MQ=255) acaG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCTCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTTGCCTACGCa < 2:400758‑M2/147‑1 (MQ=255) g‑gTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTTGCCTACGCAGTc > 1:386026/1‑150 (MQ=255) | ATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTTGCCTACGCAGTC > NC_002947/499159‑499433 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |