New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3968936 =	10 (0.300)	9 (0.300)	6/246	3.0	42.8%	coding (1020/1179 nt)	PP_3498	transposase
	?	NC_002947	3968992 =	15 (0.500)					coding (1076/1179 nt)	PP_3498	transposase
Rejected: Coverage evenness skew score above cutoff.

GTCAGAGGCTCATAGCCGCCTCCGGTTTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCATATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3969096‑3968936 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggcggcgatcaGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGC  >  NC_002947/3968992‑3969128                                                                                                                                                                                                                                                                                                            GTCAGAGGCTCATAGCCGCCTCCGGTTTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCATATAGGCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGA                                                                                                                                                      <  2:592427/150‑1  TCAGAGGCTCATAGCCGCCTCCGGTTTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCATATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAG                                                                                                                                                     >  1:760764/1‑150      AGGCTCATAGCCGCCTCCGGTTTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCATATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCGCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGG                                                                                                                                                 <  2:108244/150‑1            ATAGCCGCCTCCGGTTTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCATATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCACAAGCCGGGATAGCCAGCGCAAGAGGCGGCGATCA                                                                                                                                           >  2:375955/1‑150                                                                                  TCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCTGGCTGATCGGAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCG                                                                    >  2:527070/1‑150                                                                                               ATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCG                                                        >  2:115637/1‑150                                                                                                                 CGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGA                                           <  1:210628/145‑1                                                                                                                 CGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGA                                           >  2:210628/1‑145                                                                                                                  GCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACC                                                         >  1:634303/1‑130                                                                                                                  GCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACC                                                         <  2:634303/130‑1                                                                                                                     TCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGAC                                  >  2:800330/1‑150                                                                                                                            GCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACTGG                           <  1:800330/150‑1                                                                                                                                 AGGCGGGATAGCCAGCGCAAGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAAT                      <  1:115637/150‑1                                                                                                                                                     GAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCac  <  2:792991/150‑3                                                                                                                                                        GCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAAT                      >  1:339269/1‑127                                                                                                                                                        GCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAAT                      <  2:339269/127‑1                                                                                                                                                                                                                                                                                                            GTCAGAGGCTCATAGCCGCCTCCGGTTTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCATATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3969096‑3968936 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggcggcgatcaGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGC  >  NC_002947/3968992‑3969128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.