New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5903827 = | 43 (1.290) | 12 (0.410) | 10/240 | 1.9 | 26.4% | intergenic (+27/+80) | PP_5176/spuH | hypothetical protein/spermidine/putrescine ABC transporter permease |
? | NC_002947 | 5903887 = | 29 (0.990) | intergenic (+87/+20) | PP_5176/spuH | hypothetical protein/spermidine/putrescine ABC transporter permease |
GATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTAC > NC_002947/5903748‑5904033 | gATTGGTCAGAAGTATCAGGGACTATCCACATTGGGAGGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGaa < 1:771219/150‑1 (MQ=255) cAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGATCGGGCGTGCCCGCGAAAGGGCCa < 1:312595/150‑1 (MQ=255) gtcgcagccgcaggtcaagcgcccggcgcaggtggctgcgtcggccggacctgggcgcttcgcgggcatGCCCGCGCCCACGGGGCTCACTACGACCCTGAAGGCNGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGt > 1:668154‑M1/70‑150 (MQ=255) tCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCGCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGTAAGCTCCAGGTCAGGc > 1:166415/1‑150 (MQ=255) tCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGcc > 1:251845/1‑150 (MQ=255) acaTTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAg < 2:179082/130‑1 (MQ=255) acaTTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAg > 1:179082/1‑130 (MQ=255) aTTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTg > 1:570316/1‑150 (MQ=255) aTTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTg > 1:719738/1‑150 (MQ=255) gATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCg > 2:711890/1‑150 (MQ=255) tttGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTg > 1:634028/1‑150 (MQ=255) tttGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGACCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTg > 2:217470/1‑150 (MQ=255) ttGAACCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCGCACAGGGCTCACCACAACCCTTAAGGCTCTGAGGTCTCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCGGc < 2:360726/150‑1 (MQ=38) aaTCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTgc > 1:513093/1‑129 (MQ=255) aaTCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTgc < 2:513093/129‑1 (MQ=255) acctggccctttcgcgggcacgcccgctcccacagggacctcacngccttcagggtcgtagtgagccccgtgggcgcgggcATGCCCGCGAAGCGCCCAGGTCCGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCgac > 1:668154‑M2/82‑149 (MQ=255) cTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGc < 2:719738/150‑1 (MQ=255) cTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGa > 1:360500/1‑101 (MQ=255) cTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGa < 2:360500/101‑1 (MQ=255) cTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCt < 2:251845/150‑1 (MQ=255) ttCGCGGGCCTGCCCGCTCCCACAGGGCTCCCCACAACCCTGAAGGCTGGGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCGGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTg > 2:394746/1‑150 (MQ=39) CCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCg < 2:630457‑M1/150‑1 (MQ=255) ccacagggacctcacagccttcagggttgtggtgagccctgtgggagcgggcGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGc > 1:335400‑M2/53‑150 (MQ=255) ccacagggacctcacagccttcagggttgtggtgagccctgtgggagcgggcGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGc > 1:773334‑M2/53‑150 (MQ=255) ccacagggacctcacagccttcagggttgtggtgagccctgtgggagcgggcATGCCCGCGAAGGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTg < 1:648250‑M2/75‑1 (MQ=255) ccacagggacctcacagccttcagggttgtggtgagccctgtgggagcgggcATGCCCGCGAAGGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTg > 2:648250‑M2/53‑127 (MQ=255) cacagggacgtcacagtcttcagggttgtgttgagccttgtggaagcgggcATGCCCGCGAAGGGTCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGcc > 2:651202‑M2/52‑150 (MQ=255) CACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTgg > 2:434724‑M1/1‑127 (MQ=255) CACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTgg < 1:434724‑M1/127‑1 (MQ=255) AGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGa > 2:509309‑M1/1‑103 (MQ=255) AGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGa < 1:509309‑M1/103‑1 (MQ=255) AGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGc < 2:52647‑M1/108‑1 (MQ=255) AGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGc > 1:52647‑M1/1‑108 (MQ=255) ggacctcacagccttcagggttgtggtgagccctgtgggagcgggcGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCgg > 2:414751‑M2/47‑93 (MQ=255) ggacctcacagccttcagggttgtggtgagccctgtgggagcgggcGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCgg < 1:414751‑M2/47‑1 (MQ=255) accacAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTTCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCg > 1:298467/1‑150 (MQ=255) ccacAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCGACCTGCGCCGGGCGATAGCCCTAGAGCACACGTCTGTAGTCTGGTGCACCCTCTTCGATCGCCTGCTGAATCGc > 1:780024/1‑150 (MQ=255) cacaACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGcc > 2:617283/1‑150 (MQ=255) acagccttcagggttgtggtgagccctgtgggagcgggcATGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGc < 2:155209‑M2/35‑1 (MQ=255) acagccttcagggttgtggtgagccctgtgggagcgggcATGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGc > 1:155209‑M2/40‑74 (MQ=255) aaCCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCtt < 2:257428/149‑1 (MQ=255) aaCCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCtt > 1:257428/1‑149 (MQ=255) aaCCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTg > 1:682886/1‑150 (MQ=255) ttcagggttgtggtgagccctgtgggagcgggcGTGCCCGCGAAAgg > 1:2431‑M2/34‑47 (MQ=255) ttcagggttgtggtgagccctgtgggagcgggcGTGCCCGCGAAAgg < 2:2431‑M2/14‑1 (MQ=255) tGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGcgacg > 1:349053/1‑150 (MQ=255) aGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGacgacg < 1:617283/150‑1 (MQ=255) tgtgAGGTCCCTGTGGGCGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTg > 2:413159/1‑99 (MQ=255) ggTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGGTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGc < 2:349053/150‑1 (MQ=255) ccctgtgggagcgggcGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTg > 1:561817‑M2/17‑150 (MQ=255) cctgtgggagcgggcGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTgg > 1:784849‑M2/16‑150 (MQ=255) gagcgggcGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGa > 1:323086‑M2/9‑150 (MQ=255) gagcgggcGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGa > 2:744790‑M2/9‑150 (MQ=255) ggcGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGGCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTAc > 1:187524‑M2/4‑150 (MQ=255) ggcGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTAc < 2:166415‑M2/147‑1 (MQ=255) gTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCctgc < 2:399065/102‑1 (MQ=255) gTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCctgc > 1:399065/1‑102 (MQ=255) | GATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTAC > NC_002947/5903748‑5904033 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |