New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6060487 =	41 (1.230)	11 (0.370)	9/244	2.2	25.7%	intergenic (+67/+114)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
	?	NC_002947	6060574 =	27 (0.900)					intergenic (+154/+27)	PP_5311/PP_5312	signal transduction protein/hypothetical protein

ACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCTTGCATGAACGCCAGCTGC  >  NC_002947/6060429‑6060718                                                                                                                                                  |                                                                                                                                                  gaaatacctgaaaccaaagaagaaaggctgaagcccgacggggatgatgacgctttacCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑Taaa                                                                                                                                              <  2:791519‑M1/92‑1 (MQ=255) acaTAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑Taaa                                                                                                                                              >  2:663402/1‑150 (MQ=255)   aatacctgaaaccaaagaagaaaggctgaagcccgacggggatgatgacgctttacCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGc                                                                                                                                            >  1:791519‑M1/57‑150 (MQ=255)       ccTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGtca                                                                                                                                        >  1:680560/1‑150 (MQ=255)                         ttGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTc                                                                                                                      <  2:481904/150‑1 (MQ=255)                             tCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TCAAGCGTCATCATCCCCGTCGGGCTTCAGcc                                                                                                                  >  1:374480/1‑150 (MQ=255)                             tCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGcc                                                                                                                  >  2:485048/1‑150 (MQ=255)                             tCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGcc                                                                                                                  >  1:485138/1‑150 (MQ=255)                               aaTTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCtt                                                                                                                >  2:552172/1‑150 (MQ=255)                                aTTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCttt                                                                                                               <  1:161285/150‑1 (MQ=255)                                     tAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACAAGGGCGAATCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTtcttct                                                                                                          >  1:460468/1‑150 (MQ=255)                                              gcgcGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTCGTTTGGCGGGCACGCCCGCTACCACAGGATCACTCAT‑ACCAACTCCGTCGGTCTTCAGCCTTTCTTCTTTTGTTTCa                                                                                                 >  1:381841/1‑150 (MQ=18)                                               cgcgATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAg                                                                                                <  1:552172/150‑1 (MQ=255)                                                gcgcTTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAgg                                                                                               >  2:451478/1‑150 (MQ=255)                                                    gctttacctgtgggagcgggcgtgcccgcgaaacaagcgacgcggtgcatggcaccggcttcgccggtgttcgcgggcaagcccgctcccacagG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTAtt                                                                                           >  1:791519‑M2/95‑150 (MQ=255)                                                      tttacctgtgggagcgggcgtgcccgcgaaacaagcgacgcggtgcatggcaccggcttcgccggtgttcgcgggcaagcccgctcccacagG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTtc                                                                                         <  2:791519‑M2/58‑1 (MQ=255)                                                          aCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTtcatca                                                                                     >  1:202196/1‑150 (MQ=255)                                                               GGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTc                                                                                                                      <  2:479043‑M1/112‑1 (MQ=255)                                                               GGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTc                                                                                                                      >  1:479043‑M1/1‑112 (MQ=255)                                                                 gagcgggcgtgcccgcgaaacaagcgacgcggtgcatggcaccggcttcgccggtgttcgcgggcaagcccgctcccacagG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAAcc                                                                                  <  1:138618‑M2/65‑1 (MQ=255)                                                                 gagcgggcgtgcccgcgaaacaagcgacgcggtgcatggcaccggcttcgccggtgttcgcgggcaagcccgctcccacagG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAAcc                                                                                  >  2:138618‑M2/82‑146 (MQ=255)                                                                 GAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCttt                                                                                                        >  1:632002‑M1/1‑124 (MQ=255)                                                                 GAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCttt                                                                                                        <  2:632002‑M1/124‑1 (MQ=255)                                                                     aggcgggcccgcgaaacaagcgacgcggtgcatggcaccggcttcgccggtgttcgcgggcaagcccgctcccacagG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAAc                                                                          >  2:402124‑M2/78‑150 (MQ=255)                                                                        CTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACcac                                                                       >  1:485048‑M1/1‑150 (MQ=255)                                                                         ttGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACcaca                                                                      >  1:632597/1‑150 (MQ=255)                                                                         ttGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACcaca                                                                      >  1:451356/1‑150 (MQ=255)                                                                         gtgcccgcgaaacaagcgacgcggtgcatggcaccggcttcgccggtgttcgcgggcaagcccgctcccacagG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACcaca                                                                      >  1:108842‑M2/74‑150 (MQ=255)                                                                             ccgcgaaacaagcgacgcggtgcatggcaccggcttcgccggtgttcgcgggcaagcccgctcccacagG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCAc                                                                  >  2:267838‑M2/70‑150 (MQ=255)                                                                             ccgcgaaacaagcgacgcggtgcatggcaccggcttcgccggtgttcgcgggcaagcccgctcccacagG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCAc                                                                  >  2:270865‑M2/70‑150 (MQ=255)                                                                                     acCGGCGAAGCCGGTGCCATGCACCGTGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCg                                                          >  1:499824/1‑150 (MQ=255)                                                                                       cGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCggg                                                        >  2:101891/1‑150 (MQ=255)                                                                                                  gTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACTCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGAt                                             <  2:556799/150‑1 (MQ=255)                                                                                                      cATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACca                                                                        >  1:198749/1‑119 (MQ=255)                                                                                                      cATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACca                                                                        <  2:198749/119‑1 (MQ=255)                                                                                                        tGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGAt                                       <  1:663402/150‑1 (MQ=255)                                                                                                          ccggcttcgccggtgttcgcgggcaagcccgctcccacagG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGAtgt                                     <  2:108842‑M2/110‑1 (MQ=255)                                                                                                          cACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGAtgt                                     >  2:562674/1‑150 (MQ=255)                                                                                                              gcgTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCtt                                 <  2:451356/150‑1 (MQ=255)                                                                                                                     ttGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGa                          <  2:485138/150‑1 (MQ=255)                                                                                                                            gcgggcaagcccgctcccacagG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCtt                   <  1:267838‑M2/128‑1 (MQ=255)                                                                                                                              gggcaagcccgctcccacagG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCTTGc                 <  1:402124‑M2/130‑1 (MQ=255)                                                                                                                              gggCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCTTGc                 <  2:680560/150‑1 (MQ=255)                                                                                                                              gggCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCTTGc                 <  2:202196/150‑1 (MQ=255)                                                                                                                                   cGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCTTGCATGaa            <  2:499824/150‑1 (MQ=255)                                                                                                                                    gcccgctcccacagG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCTTGCATGAAc           <  2:632597‑M2/136‑1 (MQ=255)                                                                                                                                        gctcccacagG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCTTGCATGAACGCCa       >  1:438393‑M2/11‑150 (MQ=255)                                                                                                                                            ccacagG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATGTGGATGTGCTTGTCCTGAATCCCTTGCATGAACGCCAgctg   >  2:550059‑M2/7‑150 (MQ=255)                                                                                                                                             cacagG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACGCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCTTGCATGACCGCCAgctgc  >  2:664063‑M2/6‑150 (MQ=255)                                                                                                                                             cacagG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATccc                     >  1:343249‑M2/6‑131 (MQ=255)                                                                                                                                             cacagG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATccc                     <  2:343249‑M2/126‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                  ACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGG‑TAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCTTGCATGAACGCCAGCTGC  >  NC_002947/6060429‑6060718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.