| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 725740 | 86 (1.180) | 6 (0.080) | 6/244 | NT | 6.0% | coding (162/1203 nt) | PP_0619 | branched‑chain amino acid ABC transporter substrate‑binding protein |
| ? | NC_002947 | = 725787 | 105 (1.460) | coding (115/1203 nt) | PP_0619 | branched‑chain amino acid ABC transporter substrate‑binding protein | |||||
CGATGGCTTCCTGCACCTTGCGCACCGCCTTGCCGGCGTTGCCTTCGGTGTCGATGACTTTGTACTTGAGCGGGTGGCCGAGCAACTGCGGGTGCTCGGCGATGGCCAGGCGCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/725625‑725740‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agTCCATGTCGGGCGCCTTCGCCAGCTACGGCAAGTACGCCGACATGGGCTCGCGCCTGGCCATCGCCGAGCACCCGCAGTTGCTCGGCCACCCGCTCAAGTACAAAGTCATCGACACCGAAGGCAACGCCGGCAAGGCGGTGCGCAAGGT < NC_002947/725787‑725639 CGATGGCTTCCTGCACCTTGCGCACCGCCTTGCCGGCGTTGCCTTCGGTGTCGATGACTTTGTACTTGAGCGGGTGGCCGAGCAACTGCGGGTGCTCGGCGATGGCCAGGCGCGAGTCCATGTCGGGCGCCTTCGCCAGCTACGGCAAGT > 1:1041201/1‑150 CTTGCGCACCGCCTTGCCGGCGTTGCCTTCGGTGTCGATGACTTTGTACTTGAGCGGGTGGCCGAGCAACTGCGGGTGCTCGGCGATGGCCAGGCGCGAGTCCATGTCGGGCGCCTTCGCCAGCTACGGCAAGTACGACGACATGGGCTC < 2:1041201/150‑1 GCACCGCCTTGCCGGCGTTGCCTTCGGTGTCGATGACTTTGTACTTGAGCGGGTGGCCGAGCAACTGCGGGTGCTCGGCGATGGCCAGGCGCGAGCCCATGTCGGGCGCCTTCGCCAGCTACGGCAAGTACGCCGAC > 1:170416/1‑137 GCACCGCCTTGCCGGCGTTGCCTTCGGTGTCGATGACTTTGTACTTGAGCGGGTGGCCGAGCAACTGCGGGTGCTCGGCGATGGCCAGGCGCGAGCCCATGTCGGGCGCCTTCGCCAGCTACGGCAAGTACGCCGAC < 2:170416/137‑1 CACCGCCTTGCCGGCGTTGCCTTCGGTGTCGATGACTTTGTACTTGAGCGGGTGGCCGAGCAACTGCGGGTGCTCGGCGATGGCCAGGCGCGAGTCCATGTCGGGCGCCTTCGCCAGCTACGGCAAGTACGCCGACAT > 1:1724662/1‑138 CACCGCCTTGCCGGCGTTGCCTTCGGTGTCGATGACTTTGTACTTGAGCGGGTGGCCGAGCAACTGCGGGTGCTCGGCGATGGCCAGGCGCGAGTCCATGTCGGGCGCCTTCGCCAGCTACGGCAAGTACGCCGACAT < 2:1724662/138‑1 AGTCCATGTCGGGCGCCTTCGCCAGCTACGGCAAGTACGCCGACATGGGCTCGCGCCTGGCCATCGCCGAGCACCCGCAGTTGCTCGGCCACCCGCTCAAGTACAAAGTCATCGACACCGAAGGCAACGCCGGCAAGGCGGTGCGCAAGG < 1:607231/150‑1 AGTCCATGTCGGGCGCCTTCGCCAGCTACGGCAAGTACGCCGACATGGGCTCGCGCCTGGCCATCGCCGAGCACCCGCAGTTGCTCGGCCACCCGCTCAAGTACAAAGTCATCGACACCGAAGGCAACGCCGGCAAGGCGGTGCGCAAGG < 1:975893/150‑1 GTCCATGTCGGGCGCCTTCGCCAGCTACGGCAAGTACGCCGACATGGGCTCGCGCCTGGCCATCGCCGAGCACCCGCAGTTGCTCGGCCACCCGCTCAAGTACAAAGTCATCGACACCGAAGGCAACGCCGGCAAGGCGGTGCGCAAGGT > 1:153693/1‑150 CGATGGCTTCCTGCACCTTGCGCACCGCCTTGCCGGCGTTGCCTTCGGTGTCGATGACTTTGTACTTGAGCGGGTGGCCGAGCAACTGCGGGTGCTCGGCGATGGCCAGGCGCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/725625‑725740‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agTCCATGTCGGGCGCCTTCGCCAGCTACGGCAAGTACGCCGACATGGGCTCGCGCCTGGCCATCGCCGAGCACCCGCAGTTGCTCGGCCACCCGCTCAAGTACAAAGTCATCGACACCGAAGGCAACGCCGGCAAGGCGGTGCGCAAGGT < NC_002947/725787‑725639 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |