New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3441491 =	79 (1.080)	4 (0.060)	4/244	NT	5.0%	coding (207/3270 nt)	PP_3062	tail length determination protein
	?	NC_002947	3441522 =	74 (1.030)					coding (238/3270 nt)	PP_3062	tail length determination protein

ATCCAGGTTGCTGTCCAGCTTGCGCAGCAACTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3441524‑3441491 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgGATTCGTTGCGCAAGCAGGGGATCGAGGTCGGTAAGCTCGGTCGCGAGTACCAGCGCCTTGGGCGCGAGGCGCGGGCCGCCGATCTGCAGCTCAAGGGTCACCAGCAGCTGCAGGCGGGCAAGGAATCGCTCAAGTCGAATATCGG  >  NC_002947/3441522‑3441667                                                                                                                                                                                      ATCCAGGTTGCTGTCCAGCTTGCGCAGCAACTTGGATTCGTTGCGCAAGCAGGGGATCGAGGTCGGTAAGCTCGGTCGCGAGTACCAGCGCCTTGGGCGCGAGGCGCGGGCCGCCGATC                                                               >  1:896586/1‑119 ATCCAGGTTGCTGTCCAGCTTGCGCAGCAACTTGGATTCGTTGCGCAAGCAGGGGATCGAGGTCGGTAAGCTCGGTCGCGAGTACCAGCGCCTTGGGCGCGAGGCGCGGGCCGCCGATC                                                               <  2:896586/119‑1    CAGGTTGCTGTCCAGCTTGCGCAGCAACTTGGATTCGTTGCGCAAGC                                                                                                                                    >  1:397849/1‑47    CAGGTTGCTGTCCAGCTTGCGCAGCAACTTGGATTCGTTGCGCAAGC                                                                                                                                    <  2:397849/47‑1                                 TGGATTCGTTGCGCAAGCAGGGGATCGAGGTCGGTAAGCTCGGTCGCGAGTACCAGCGCCTTGGGCGCGAGGCGCGGGCCGCCGATCTGCAGCTCAAGGGTCACCAGCAGCTGCAGGCGGGCAAGGAATCGCTCAAGTCGAATATCGG  <  1:198915/148‑1                                 TGGATTCGTTGCGCAAGCAGGGGATCGAGGTCGGTAAGCTCGGTCGCGAGTACCAGCGCCTTGGGCGCGAGGCGCGGGCCGCCGATCTGCAGCTCAAGGGTCACCAGCAGCTGCAGGCGGGCAAGGAATCGCTCAAGTCGAATATCGG  >  2:198915/1‑148                                                                                                                                                                                      ATCCAGGTTGCTGTCCAGCTTGCGCAGCAACTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3441524‑3441491 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgGATTCGTTGCGCAAGCAGGGGATCGAGGTCGGTAAGCTCGGTCGCGAGTACCAGCGCCTTGGGCGCGAGGCGCGGGCCGCCGATCTGCAGCTCAAGGGTCACCAGCAGCTGCAGGCGGGCAAGGAATCGCTCAAGTCGAATATCGG  >  NC_002947/3441522‑3441667

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.