New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5405650 =	69 (0.950)	6 (0.080)	6/240	NT	8.3%	coding (368/660 nt)	PP_4749	amino acid ABC transporter permease
	?	NC_002947	5405682 =	66 (0.930)					coding (336/660 nt)	PP_4749	amino acid ABC transporter permease

TTTCTACTTTGGCCTGCCCAGCGTCAACCTCACCCTGACCTCGTTCTGGGCTGCTGCGCTGGCCATGGCGTACTGCACGGCCGCCTACACCAGTGAAATCATTCGCGGTGGCATCGAGTCGGTGGCCGCGGGGCAAACCGAGGCCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5405799‑5405650 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgaCTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAGGGTGAGGTTGACGCTGGGCAGGCCAAAGTAGAAATACTGCAGCAGGATCAACGCCGGTGCGCCAC  >  NC_002947/5405682‑5405830                                                                                                                                                                                                                                                                                                             ttaCTACTTTGGCCTGCCCAGCGTCAACCTCACCCTGACCTCGTTCTGGGCTGCTGCGCTGGCCATGGCGTACTGCACGGCCGCCTACACCAGTGAAATCATTCGCGGTGGCATCGAGTCGGTGGCCGCGGGGCAAACCGAGGCCGCCGA                                                                                                                                                       >  1:1934038/4‑150       CTTTGGCCTGCCCAGCGTCAACCTCACCCTGACCTCGTTCTGGGCTGCTGCGCTGGCCATGGAGTACTGCACGGCCGCCTACACCAGTGAAATCATTCGCGGTGGCATCGAGTCTGTGTCCGCGGGGCAAACCGAGGCCGCCGACTCGAT                                                                                                                                                 <  2:1191175/150‑1                  CCAGCGTCAACCTCACCCTGACCTCGTTCTGGGCTGCTGCGCTGGCCATGGCGGAGTGCACGGCCGCCTACACCAGTGAAATCATTCGCGGTGGCATCGAGTCGGTGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGAA                                                                                                                                      <  2:592332/150‑1                                                                                                                       TCGGTGGCCGCGGGGCAAACCGAGGCCGCCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGC                                                                                              >  1:319727/1‑89                                                                                                                       TCGGTGGCCGCGGGGCAAACCGAGGCCGCCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGC                                                                                              <  2:319727/89‑1                                                                                                                           TGGCCGCGGGGCAAACCGAGGCCGCCGACTCGATGCCACCGCGAATGATTTCACT                                                                                                                            >  1:1734359/1‑55                                                                                                                           TGGCCGCGGGGCAAACCGAGGCCGCCGACTCGATGCCACCGCGAATGATTTCACT                                                                                                                            <  2:1734359/55‑1                                                                                                                                                   CCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAGGGTGAGGTTGACGCTGGGCAGGCCAAAGTAGAAATACTGCAGCAGGATCAACGCCGGTGCGC     >  2:112865/1‑150                                                                                                                                                      ACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAGGGTGAGGTTGACGCTGGGCAGGCCAAAGTAGAAATACTGCAGCAGGATCAACGCCGGTGCGCCAC  >  1:1613013/1‑150                                                                                                                                                                                                                                                                                                             TTTCTACTTTGGCCTGCCCAGCGTCAACCTCACCCTGACCTCGTTCTGGGCTGCTGCGCTGGCCATGGCGTACTGCACGGCCGCCTACACCAGTGAAATCATTCGCGGTGGCATCGAGTCGGTGGCCGCGGGGCAAACCGAGGCCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5405799‑5405650 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgaCTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAGGGTGAGGTTGACGCTGGGCAGGCCAAAGTAGAAATACTGCAGCAGGATCAACGCCGGTGCGCCAC  >  NC_002947/5405682‑5405830

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.