| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,038,128 | 0 | C | A | 46.7% | ‑5.1 / 15.8 | 15 | R303S (AGG→AGT) ‡ | PP_5290 | transposase |
| Reads supporting (aligned to +/- strand): ref base C (4/4); new base A (3/4); total (7/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.50e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCAGCCCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGTGATGGGCGTAATACTGCTTCCAGGTCGCGGTTCGACTGCCGCTCATCGAGGCGTTGTAC > NC_002947/6037985‑6038269 | gatgTACGCGTCAGCGTGCCAGAGAATTGCCCTCCTCAAGAGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCAGCCCCAGCCTCAGCTGGCCGGCTTGCCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCtcatc < 1:197302/147‑1 (MQ=1) cacgcggcAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCAGCCCCAGGATCAGCTGGCCGGCCTGGCCCCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATGAGGc < 2:1132000/143‑1 (MQ=1) aCGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCAGCCCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGAGGCATCAGGcc < 1:1263459/150‑1 (MQ=0) aCGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCAGCCCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGAGGCATCAGGcc < 2:2735105/150‑1 (MQ=0) cctaGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCAGCCCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGc > 1:3827732/4‑150 (MQ=1) ccAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCAGCCCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGAGGCATCAGGcc > 1:1997527/1‑122 (MQ=0) ccAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCAGCCCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGAGGCATCAGGcc < 2:1997527/122‑1 (MQ=0) tcggTTTGGGCGGGCTGCGTTGCAGCCCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCaa > 1:3829176/4‑131 (MQ=1) tGCGTTGCAGCCCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGAGGCATCAGGcc < 1:1801496/87‑1 (MQ=1) tGCGTTGCAGCCCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGAGGCATCAGGcc > 2:1801496/1‑87 (MQ=1) aggcccAGCCTCAGCTGGCCGGCTTGGACCCTCCGGTATATATTTCGGGCTTCCAGTCGGCCTGATGCCTCATCACGCAGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGt < 2:2536718/147‑1 (MQ=1) ccgcAGCGGGCCGGCTGGGCCCCTCCGGTATCTATCTCGGGCTTCCAGCCGGCCTGATGCCTCATCAGGCCGAAGGCCATCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGTGATGGGCg < 2:231184/147‑1 (MQ=1) cTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGAGGCATCAGGcc > 2:1460863/1‑70 (MQ=1) ggtaCCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATc > 2:302427/4‑88 (MQ=1) gcatGATGCCTCATCAGGCCGAAGGCCAGCCGAGACAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGTGATGGGCGTAATACTGCTTCCAGTTCGCGGTTCGACTCCCGCTGATCGAGGCGTTGtca > 2:3065229/4‑148 (MQ=1) | GAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCAGCCCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGTGATGGGCGTAATACTGCTTCCAGGTCGCGGTTCGACTGCCGCTCATCGAGGCGTTGTAC > NC_002947/6037985‑6038269 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |