New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1296580 =	NA (NA)	29 (0.390)	20/248	3.9	NA	intergenic (‑327/‑239)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
	?	NC_002947	1296616 =	NA (NA)					intergenic (‑363/‑203)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
Rejected: Coverage evenness skew score above cutoff.

CGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAG  >  NC_002947/1296435‑1296625                                                                                                                                                   |                                              cGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAaaaag‑aaaag                                           >  2:1645525/1‑150 (MQ=255)    gCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCg                                        >  1:1486746/1‑150 (MQ=255)     cccTTTCGCGGGTAAACCCGCTAATAAATGCGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCgg                                       <  1:998757/150‑1 (MQ=17)             cgGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCg                               <  1:657717/150‑1 (MQ=255)              gggTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCgg                              >  2:874796/1‑150 (MQ=255)              gggTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCgg                              >  2:5213/1‑150 (MQ=255)                gTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTa                            >  2:1690277/1‑150 (MQ=255)                 tAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAg                           <  1:874796/150‑1 (MQ=255)                 tAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCACTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGCAAAAGGCGGCTGGccctacc                            <  2:1959559/150‑5 (MQ=17)                  aaaCCCGCTCCTCCAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTCTCGCGTAGCAAACATGCGGTGTACGGCTTCAGTTCCGAAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTggg                          <  1:1135043/150‑1 (MQ=17)                          tCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAgccg                  >  1:1679366/1‑150 (MQ=255)                          tCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAgccg                  >  2:1781682/1‑150 (MQ=255)                           ccTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAgccgc                 >  2:1557964/1‑150 (MQ=255)                            cTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAgccgcc                >  1:835396/1‑150 (MQ=255)                            cTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAgccgcc                <  1:5213/150‑1 (MQ=255)                              aCAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCtt              <  1:1931929/150‑1 (MQ=255)                              aCAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCtt              <  1:1693083/150‑1 (MQ=255)                                  gggACCATTGTTACGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGc          >  2:786141/1‑150 (MQ=38)                                     tcccctGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCttt       <  2:1766266/145‑1 (MQ=25)                                     aCCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCttt       <  1:786141/150‑1 (MQ=39)                                       cATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCtttt            <  1:917326/143‑1 (MQ=38)                                       cATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCtttt            >  2:917326/1‑143 (MQ=38)                                       cATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGt     <  2:1679366/150‑1 (MQ=38)                                       cATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGt     >  1:248442/1‑150 (MQ=38)                                       cATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGt     >  2:550945/1‑150 (MQ=38)                                         ttGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTa   >  1:1679811/1‑150 (MQ=35)                                          tGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAg  <  2:248442/150‑1 (MQ=35)                                          tGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAg  <  2:621686/150‑1 (MQ=35)                                                                                                                                                   |                                              CGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAG  >  NC_002947/1296435‑1296625

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.