| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5382446 = | 36 (0.680) | 12 (0.300) | 11/204 | 2.8 | 35.4% | intergenic (+18/+115) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR |
| ? | NC_002947 | 5382544 = | 17 (0.430) | intergenic (+116/+17) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR | |||||
GTGCTGCATGAGGCGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5382626‑5382446‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctgtgggagcgggcttgcccgcgaagaggccggTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCCCTGCCCTC > NC_002947/5382544‑5382686 GTGCTGCATGAGGCGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAAAGGCAAGCAGCGGGCTCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCT < 2:681868/150‑1 GCTGCATGAGGCGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGT < 1:541659/150‑1 CTGCATGAGGCGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTG < 2:78305/150‑1 CTGCATGAGGCGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTG < 2:236085/150‑1 TGCATGAGGCGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGG < 1:514795/150‑1 AGGCGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGG < 2:364967/150‑1 GCGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGC < 2:426310/150‑1 ACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGC < 1:1113300/150‑1 ACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTG > 1:366726/1‑137 ACGAAGAAGCCCAGCGGGTGGCGCGGGCACAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTG < 2:366726/137‑1 AGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAA < 1:970006/150‑1 TCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGG > 2:158471/1‑150 TTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCT > 2:1127474/1‑150 CCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGC > 2:1264451/1‑108 CCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGC < 1:1264451/108‑1 CCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCA > 1:845190/1‑150 CCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCA > 2:733357/1‑150 CACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGG > 1:818100/1‑127 CACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGG < 2:818100/127‑1 ACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGC < 2:1070269/85‑1 ACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGC > 1:1070269/1‑85 GATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCG < 2:157730/43‑1 GATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCG > 1:157730/1‑43 CCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAACCGCCACGGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACA < 1:158471/150‑1 TGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAA < 1:1127474/150‑1 GGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCC > 1:690835/1‑80 GGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCC < 2:690835/80‑1 CCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCC < 2:1086612/122‑1 CCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCC > 1:1086612/1‑122 CCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCC > 1:175020/1‑150 GCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCCCT < 2:1060200/150‑1 GCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCCCT > 2:816977/1‑150 AGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCCCTGCCCTC < 2:175020/150‑1 GTGCTGCATGAGGCGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5382626‑5382446‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctgtgggagcgggcttgcccgcgaagaggccggTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCCCTGCCCTC > NC_002947/5382544‑5382686 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |