New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 6006595 =47 (0.880)12 (0.310) 10/202 3.1 32.6% intergenic (+7/+92) ydcJ/PP_5261 metalloprotein/LysR family transcriptional regulator
?NC_002947 6006679 = 15 (0.380)intergenic (+91/+8) ydcJ/PP_5261 metalloprotein/LysR family transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.

GGCGAGCGGTTGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6006776‑6006595
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTG  >  NC_002947/6006679‑6006822
                                                                                                                                                                                                                                                                                                                                      
GGCGAGCGGTTGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAGTCCAGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCT                                                                                                                                                                                  <  1:414864/150‑1
GGCGAGCGGTTGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCT                                                                                                                                                                                  <  2:897338/150‑1
  cgcGCGGTTGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGCGGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGT                                                                                                                                                                                <  1:12684/147‑1
     GCGGTTGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCAGTACCTGTGGG                                                                                                                                                                             <  1:615664/150‑1
      CGGTTGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGA                                                                                                                                                                            <  1:811740/150‑1
          TGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGG                                                                                                                                                                        <  1:227918/150‑1
          TGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGG                                                                                                                                                                        <  2:565490/150‑1
              GCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGTTCGTATGCCCTGTACCTGTGGGAGCGGGCGA                                                                                                                                                                    <  1:91931/150‑1
                               TGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGA                                                                                                                                                                    >  1:1271965/1‑133
                               TGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGA                                                                                                                                                                    <  2:1271965/133‑1
                                                                                                                    TCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGC                                                              >  1:716128/1‑150
                                                                                                                      GCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCG                                                            >  2:710470/1‑150
                                                                                                                          GCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCT                                                                                   <  2:780268/123‑1
                                                                                                                          GCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCT                                                                                   >  1:780268/1‑123
                                                                                                                            TCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCAT                                                                                                   <  1:26984/105‑1
                                                                                                                            TCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCAT                                                                                                   >  2:26984/1‑105
                                                                                                                              CCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCT                                                    >  2:274318/1‑150
                                                                                                                              CCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAAC                                                                          >  2:827059/1‑128
                                                                                                                              CCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAAC                                                                          <  1:827059/128‑1
                                                                                                                              CCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCT                                                    >  1:1004768/1‑150
                                                                                                                              CCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCG                                                                                                                                                    <  1:4093/54‑1
                                                                                                                              CCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCG                                                                                                                                                    >  2:4093/1‑54
                                                                                                                                ACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCG                                                  >  2:65075/1‑150
                                                                                                                                ACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCG                                                                                                                                                    <  1:765507/52‑1
                                                                                                                                ACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCG                                                                                                                                                    >  2:765507/1‑52
                                                                                                                                    GTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGC                                              >  1:285008/1‑150
                                                                                                                                                         GGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGACTTAAAGAGTGTGACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACA                         >  2:1001626/1‑150
                                                                                                                                                          GAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCC                                                             <  1:723404/113‑1
                                                                                                                                                          GAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCC                                                             >  2:723404/1‑113
                                                                                                                                                           AGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACC                       <  1:360404/150‑1
                                                                                                                                                            GCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCA                      <  2:91931/150‑1
                                                                                                                                                             CGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAG                     >  2:1180650/1‑150
                                                                                                                                                              GGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGG                    <  1:565490/150‑1
                                                                                                                                                                    GCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGGGCGCGGCCACACCAGGTAGTAA              >  2:856191/1‑150
                                                                                                                                                                     CCCGCGAAGAGGCCGGTACAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAAT             <  2:1004768/150‑1
                                                                                                                                                                      CCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATC            <  1:274318/150‑1
                                                                                                                                                                        GCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCA          <  2:376321/150‑1
                                                                                                                                                                                GCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTG  >  1:325190/1‑150
                                                                                                                                                                                                                                                                                                                                      
GGCGAGCGGTTGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6006776‑6006595
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTG  >  NC_002947/6006679‑6006822

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.