New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 883865	21 (0.390)	12 (0.300)	8/210	3.8	39.3%	intergenic (+100/‑228)	PP_0766/PP_0767	hypothetical protein/LuxR family transcriptional regulator
	?	NC_002947	= 883875	21 (0.520)					intergenic (+110/‑218)	PP_0766/PP_0767	hypothetical protein/LuxR family transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.

TTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTC  >  NC_002947/883727‑884019                                                                                                                                                     |                                                                                                                                                 ttCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCgg                                                                                                                                                 <  2:873143/150‑1 (MQ=255)           cAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCggg                                                                                                                                       <  2:527590/150‑1 (MQ=255)                                   gCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGaa                                                                                                                           >  2:639501/1‑138 (MQ=255)                                   gCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGaa                                                                                                                           <  1:639501/138‑1 (MQ=255)                                            aaaTCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCg                                                                                                                    <  2:1108263/136‑1 (MQ=255)                                            aaaTCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCg                                                                                                                    >  1:1108263/1‑136 (MQ=255)                                                 aCTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGCCTTCACCCGCGAAGAGGCCGGGCAAGGCAGTCAAcctcc                                                                                                 >  1:273023/1‑150 (MQ=255)                                                                       gAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCg                                                                           >  2:978353/1‑150 (MQ=255)                                                                           gCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGggcaagg                                                                                                             >  2:625585/1‑112 (MQ=255)                                                                           gCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGggcaagg                                                                                                             <  1:625585/112‑1 (MQ=255)                                                                           gCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGcccc                                                                       >  1:735096/1‑150 (MQ=255)                                                                                    cGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGt                                                              <  1:978353/150‑1 (MQ=255)                                                                                           gCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGc                                                                          <  1:629772/131‑1 (MQ=255)                                                                                           gCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGc                                                                          >  2:629772/1‑131 (MQ=255)                                                                                                        cTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCtttt                                          >  1:796729/1‑150 (MQ=255)                                                                                                                gCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAg                                  <  2:796729/150‑1 (MQ=255)                                                                                                                 ccTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGt                                 <  1:1237837/150‑1 (MQ=255)                                                                                                                  ctctTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTc                                >  1:1264343/1‑150 (MQ=255)                                                                                                                                 cccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTAtt                 >  1:899565/1‑150 (MQ=255)                                                                                                                                  ccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTg                >  1:20304/1‑150 (MQ=255)                                                                                                                                    gCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTgcg              >  2:860058/1‑150 (MQ=255)                                                                                                                                              gTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCcatca       <  2:561539/147‑1 (MQ=255)                                                                                                                                              gTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCcatca       >  1:561539/1‑147 (MQ=255)                                                                                                                                                tCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTc  <  2:20304/150‑1 (MQ=255)                                                                                                                                                tCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTc  <  2:735096/150‑1 (MQ=255)                                                                                                                                                   gcgGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATAc                                                                                          <  1:685748/59‑1 (MQ=255)                                                                                                                                                   gcgGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATAc                                                                                          >  2:685748/1‑59 (MQ=255)                                                                                                                                                     |                                                                                                                                                 TTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTC  >  NC_002947/883727‑884019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.