New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5816910 =	64 (1.200)	15 (0.330)	11/238	3.4	22.6%	intergenic (+40/+89)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
	?	NC_002947	5816973 =	47 (1.020)					intergenic (+103/+26)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
Rejected: Coverage evenness skew score above cutoff.

TGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGA  >  NC_002947/5816833‑5817119                                                                                                                                             |                                                                                                                                                   tgcCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCCCTCGCGCGCAGCGCACATACCTGTGGGAGCGGGCGCGCCCGCGaa                                                                                                                                           >  2:571930/1‑150 (MQ=255)  gcCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGaaa                                                                                                                                          >  1:568290/1‑150 (MQ=255)   ccGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAg                                                                                                                                         <  1:1072642/150‑1 (MQ=255)   ccGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAg                                                                                                                                         <  1:388707/150‑1 (MQ=255)        agagCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCt                                                                                                                                    <  1:428943/150‑1 (MQ=255)            cagcagcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTGGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGGGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGc                                                                                                                                >  1:168599/1‑150 (MQ=255)             agcagcTGAGTCTGTCCAAGCCTTAAGCTGATCTTCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCTCGCGCAGCGCACATTTCTGTGGGAGCGTTCGCGCTCGCGAAAGGGCCTTTGCa                                                                                                                               <  2:908983/150‑1 (MQ=37)             agcagcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCa                                                                                                                               >  2:756785/1‑150 (MQ=255)                   tGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGGACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCTGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAGAGGGCCTTTGCAGGtact                                                                                                                         >  1:789951/1‑150 (MQ=255)                     aGTCTGGCAAAGCGTTAAGCTCATCGGCGCTATCCGGAACCGGCCCCTTCGCGGGCACGCCCGCGCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCGCACATACTTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGtactac                                                                                                                       <  2:1251153/150‑1 (MQ=38)                           gCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGAGCGCCCGCGAAAGGGGCTTTGCAGGTACTACAAGccc                                                                                                                 >  2:943359/1‑149 (MQ=255)                            ccAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCtt                                                                                                                <  1:943359/150‑1 (MQ=255)                             cAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGta                                                                                                                           <  1:821512/138‑1 (MQ=255)                             cAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCCCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCttt                                                                                                               >  2:948598/1‑150 (MQ=255)                             cAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCACACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGta                                                                                                                           >  2:821512/1‑138 (MQ=255)                             cAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTACGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATAGCTGTGGGAGCGGGCGCGCCCGCGACCGGGCCTTTGCAGGTACCACAAgacctt                                                                                                               >  1:1229568/1‑145 (MQ=39)                                  gTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCa                                                                                                          >  2:1208014/1‑150 (MQ=255)                                    tacgCTCATCGGCGCTCTCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCTCGGGGAGCGCGTCGCTCTCGCGCGCAGCGCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAAc                                                                                                        <  2:568290/147‑1 (MQ=38)                                         tGATCGGCGCTATCCGGTACCGGCCCCTTCTCGGGCACGCCCGCTCCCCCATGTCGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGAGAGCGCGCGCGCGCGCGAAAGGGCCTTTGCAGGTACTACCAGCCTTTGATCAACCCTCg                                                                                                   >  1:302415/1‑150 (MQ=255)                                         tGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCg                                                                                                   >  2:440158/1‑150 (MQ=255)                                               gcgcTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCt                                                                                             <  1:440158/150‑1 (MQ=255)                                                   tATCCGGTACCGGCCCCTTCGCGCGCCCGCCCGCAAAAATCGGAAGAGCACACGTCTCGCGCGCAGCTCATTAACCTGTGGGAGCAGGCGCGCCCGCGAAAGGGCCGTTGCAGGTACTAGAGGCCTATGAAAAACCCTCGCTCCCTCAGc                                                                                         >  1:549023/1‑150 (MQ=255)                                                       cGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTcc                                                                                     <  2:538854/150‑1 (MQ=255)                                                                  ccTCCGCGGGCACCCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCCCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGccccc                                                                          <  1:571930/150‑1 (MQ=255)                                                                             aCGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAg                                                               >  1:1199046/1‑150 (MQ=255)                                                                             aCGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAg                                                               <  1:1208014/150‑1 (MQ=255)                                                                                 ccGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATc                                                           >  1:1170952/1‑150 (MQ=255)                                                                                 ccGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCACTCCATCGTCGACATc                                                           >  2:420215/1‑150 (MQ=255)                                                                                     tCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCt                                                       >  2:136243/1‑150 (MQ=255)                                                                                       ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGGGCGCCCGCGAAAGGGCCTTAGCCGGGACTACAAGCCTTTGAGCAACCCTCGCTTCCTCAGCCTCGGCAACTCCCCCTCCATCGTCAGCACGCCCTcc                                                     >  2:1133041/1‑150 (MQ=255)                                                                                       ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGaaa                                                                                                                                          <  1:445533/65‑1 (MQ=255)                                                                                       ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGaaa                                                                                                                                          >  2:445533/1‑65 (MQ=255)                                                                                       ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGTCTCCGCAACGCCCCCTCCCTCGTCAGCATCCCCTcc                                                     >  2:236073/1‑150 (MQ=255)                                                                                       ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTcc                                                     >  1:1087257/1‑150 (MQ=255)                                                                                       ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTAGGAGCGGGCGTGCCCGCGAAGGGGc                                                                                                                                      <  2:1082245/69‑1 (MQ=25)                                                                                       ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTAGGAGCGGGCGTGCCCGCGAAGGGGc                                                                                                                                      >  1:1082245/1‑69 (MQ=25)                                                                                        cacaGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTccg                                                    <  1:756785/150‑1 (MQ=255)                                                                                           aGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACGCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTccgccg                                                 >  1:932294/1‑150 (MQ=255)                                                                                            ggTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCcgccgc                                                <  2:879183/150‑1 (MQ=255)                                                                                                gcgcGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGccgccccg                                            >  1:903606/1‑150 (MQ=255)                                                                                                 cgcgTCGCGCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGccgccccgc                                           <  2:548316/150‑1 (MQ=255)                                                                                                          ctcGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCa                                  <  1:948598/150‑1 (MQ=255)                                                                                                              cgcgcAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGTCCTGCATCACTGa                              <  2:1199046/150‑1 (MQ=255)                                                                                                               gcgcAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATAAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGaa                             <  2:549023/150‑1 (MQ=255)                                                                                                                 gcAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGa                           >  1:1227303/1‑150 (MQ=255)                                                                                                                    gacgcgctACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACaa                        <  1:1023733/143‑1 (MQ=255)                                                                                                                          aTACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGaa                             >  2:161962/1‑139 (MQ=255)                                                                                                                          aTACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGaa                             <  1:161962/139‑1 (MQ=255)                                                                                                                             ccTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCaa               <  2:1170952/150‑1 (MQ=255)                                                                                                                              cTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTccc                                                                                              >  2:982002/1‑70 (MQ=255)                                                                                                                              cTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTccc                                                                                              <  1:982002/70‑1 (MQ=255)                                                                                                                              cTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAAc              >  2:60952/1‑150 (MQ=255)                                                                                                                                  gggAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGcc          <  1:1221707/150‑1 (MQ=255)                                                                                                                                   ggAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTTCGCCAAcccccc         >  2:779029/1‑150 (MQ=255)                                                                                                                                      gCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTc      <  2:903606/150‑1 (MQ=255)                                                                                                                                          gcgcgcCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGGCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGa  >  1:719156/1‑150 (MQ=255)                                                                                                                                             |                                                                                                                                                   TGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGA  >  NC_002947/5816833‑5817119

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.