| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 196,351 | 0 | C | G | 36.4% | 88.1 / 78.9 | 78 | T619T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (27/22); new base G (13/15); total (40/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.87e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.56e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCG > NC_002947/196203‑196498 | aGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACACTGTCCAACGGCCAAACCa > 2:999603/1‑150 (MQ=255) gACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAt > 2:418157/1‑150 (MQ=255) aCCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTACAACGGTGCAATCCTG‑CCCAGAAGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAtt > 1:341346/1‑150 (MQ=14) ccACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTa < 2:638313/150‑1 (MQ=40) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACTGCCAAACCATTAc < 2:1152029/150‑1 (MQ=255) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAc > 1:1152029/1‑150 (MQ=255) gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGt > 2:155615/1‑150 (MQ=255) aTCAACGACTCGGTCGACACCACTCCCACGAACCTGATGGCGTGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt < 1:731082/150‑1 (MQ=14) aTCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt < 2:934675/150‑1 (MQ=255) aaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCa > 1:743686/1‑139 (MQ=255) aaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCa < 2:743686/139‑1 (MQ=255) aaCGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa < 1:876764/150‑1 (MQ=25) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAg > 1:276062/1‑150 (MQ=255) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAg < 1:77156/150‑1 (MQ=40) gACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGcc > 1:976501/1‑150 (MQ=255) aCTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCg < 1:212521/150‑1 (MQ=255) gACACCACTACCCCGGCCGGGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAcc > 2:700019/1‑150 (MQ=11) acacCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGcc > 1:785228/1‑140 (MQ=39) acacCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGcc < 2:785228/140‑1 (MQ=39) accacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAg > 2:244127/1‑150 (MQ=18) accacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAg < 1:94339/150‑1 (MQ=255) accacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAg > 2:94339/1‑150 (MQ=255) aaccccaCCGCGTCCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAg < 2:1057935/144‑1 (MQ=16) ccaccaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAgg < 1:939041/150‑1 (MQ=255) caccaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCATCTCTT‑CCCAGACGCCGGTGACCGTGACCCTGTCCAAAGTCTTGACTATTACCGTTGAAGCCGGCAAAACCCAggg < 1:947642/146‑1 (MQ=11) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAt > 2:335820/1‑123 (MQ=35) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAt < 1:335820/123‑1 (MQ=37) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAggg > 2:1144057/1‑150 (MQ=17) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAggg > 1:154015/1‑150 (MQ=38) accaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTAAACCGTGACCCTGAGC‑ATCCGGTCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGc > 1:158229/4‑150 (MQ=11) acTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGc > 2:1196270/1‑150 (MQ=38) aCCGCGACTCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACTCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGTCGGCAAAACCCAGGGCAGc < 2:462651/150‑1 (MQ=255) cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGt > 1:402406/1‑150 (MQ=255) cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGt > 1:569615/1‑150 (MQ=255) gcgACCCTGACGGCGAGCCCATCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTc > 1:511823/1‑150 (MQ=11) cccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAtt > 1:666419/1‑150 (MQ=35) cccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAtt < 2:666419/150‑1 (MQ=35) ggCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCaaaa < 1:2285/125‑1 (MQ=255) ccGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCg > 2:448303/1‑150 (MQ=11) gTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGaa > 2:365418/1‑150 (MQ=255) ggTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGa < 2:402406/150‑1 (MQ=11) gTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc > 2:1096935/1‑150 (MQ=35) gTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGAc < 1:448303/150‑1 (MQ=11) gTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGAc < 2:1077503/150‑1 (MQ=11) aCCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGa < 2:39638/98‑1 (MQ=34) aCCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGa > 1:39638/1‑98 (MQ=34) cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTa > 2:31587/1‑150 (MQ=255) cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTa > 2:75334/1‑150 (MQ=255) gcggcgTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTacaaca > 1:693189/1‑150 (MQ=35) ggcgTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAAGCCGGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACaacaac > 1:1044502/1‑150 (MQ=11) gcgTGATCACTTACACCGTGACCCTGAGCAATACTG‑CTCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACg > 1:946660/1‑150 (MQ=25) gcgTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACg < 2:475082/150‑1 (MQ=255) gATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 2:511823/150‑1 (MQ=11) gATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 1:31587/150‑1 (MQ=255) gATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 1:960571/150‑1 (MQ=255) tCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 1:700334/150‑1 (MQ=11) aCTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt < 2:569615/150‑1 (MQ=11) ttACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCCGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 2:99537/143‑1 (MQ=18) ttACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCCGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 1:99537/1‑143 (MQ=18) ttACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGAc < 1:655678/127‑1 (MQ=11) ttACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGAc > 2:655678/1‑127 (MQ=11) acCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgt < 2:693189/150‑1 (MQ=37) tGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCa < 2:311111/150‑1 (MQ=11) aCCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCAcc < 1:1196270/150‑1 (MQ=39) tGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGACCCATAACGGCAGCGACACCGGTTCGACTGTCAGTGTCCCCATCg > 2:104108/1‑150 (MQ=11) aGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCgag < 2:864823/150‑1 (MQ=39) gCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCgaga > 1:679076/1‑150 (MQ=38) tCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGc < 1:418157/150‑1 (MQ=38) aGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc > 1:923706/1‑115 (MQ=11) aGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 2:923706/115‑1 (MQ=255) tGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCg < 1:1096935/150‑1 (MQ=255) atccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTGAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTg > 1:141669/3‑150 (MQ=255) aCCCTGTCCACCGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGACTGACCTCTACAACAACGCATCGACTGTCAGCCGCACAATCGAGAACCCCACAGGGGGTAAGTTCGAGCAACTg > 2:212654/1‑150 (MQ=11) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCa < 2:415495/110‑1 (MQ=38) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCa > 1:415495/1‑110 (MQ=38) aaCCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCAc > 2:1118057/1‑96 (MQ=39) aaCCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCAc < 1:1118057/96‑1 (MQ=39) aCCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCg > 1:567015/1‑150 (MQ=255) | AGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCG > NC_002947/196203‑196498 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |