| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 196,327 | 0 | A | C | 34.2% | 88.7 / 77.4 | 82 | T611T (ACA→ACC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base A (28/26); new base C (12/16); total (40/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.91e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.44e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCG > NC_002947/196178‑196472 | cTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACa > 1:864823/1‑150 (MQ=39) cccGAACCCGACGCCGGCTCAGACCACGATGAATGACTTTTTTTTTTCCAGTACCGCGACCCTGACGGCGAGGCGGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGAc < 1:1250214/150‑1 (MQ=11) cccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCAAGTAGTGCAACGAAGCCCGGACTCA‑CTCGCACACCTGTACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGAc < 1:351830/150‑1 (MQ=2) cGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGAccc > 2:1271663/1‑150 (MQ=37) gAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCt < 2:333737/150‑1 (MQ=255) cGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGCGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCa > 1:1213591/1‑150 (MQ=255) aCGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAAc < 1:761086/150‑1 (MQ=255) tCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAAc > 2:244442/1‑150 (MQ=25) aGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACACTGTCCAACGGCCAAACCa > 2:999603/1‑150 (MQ=255) gACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTAATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAt > 2:418157/1‑150 (MQ=255) aCCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTACAACGGTGCAATCCTG‑CCCAGAAGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAtt > 1:341346/1‑150 (MQ=14) ccACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTa < 2:638313/150‑1 (MQ=40) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACTGCCAAACCATTAc < 2:1152029/150‑1 (MQ=255) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAc > 1:1152029/1‑150 (MQ=255) gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGt > 2:155615/1‑150 (MQ=255) gATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAAc < 1:147814/133‑1 (MQ=37) gATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAAc > 2:147814/1‑133 (MQ=21) aTCAACGACTCGGTCGACACCACTCCCACGAACCTGATGGCGTGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt < 1:731082/150‑1 (MQ=14) aTCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt < 2:934675/150‑1 (MQ=255) aaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCa < 2:743686/139‑1 (MQ=255) aaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCa > 1:743686/1‑139 (MQ=255) aaCGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa < 1:876764/150‑1 (MQ=25) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAg > 1:276062/1‑150 (MQ=255) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAg < 1:77156/150‑1 (MQ=40) gACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGcc > 1:976501/1‑150 (MQ=255) aCTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCg < 1:212521/150‑1 (MQ=255) gACACCACTACCCCGGCCGGGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAcc > 2:700019/1‑150 (MQ=11) acacCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGcc < 2:785228/140‑1 (MQ=39) acacCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGcc > 1:785228/1‑140 (MQ=39) accacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAg > 2:244127/1‑150 (MQ=18) accacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAg > 2:94339/1‑150 (MQ=255) accacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAg < 1:94339/150‑1 (MQ=255) aaccccaCCGCGTCCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAg < 2:1057935/144‑1 (MQ=16) ccaccaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAgg < 1:939041/150‑1 (MQ=255) caccaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCATCTCTT‑CCCAGACGCCGGTGACCGTGACCCTGTCCAAAGTCTTGACTATTACCGTTGAAGCCGGCAAAACCCAggg < 1:947642/146‑1 (MQ=11) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAt < 1:335820/123‑1 (MQ=37) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAt > 2:335820/1‑123 (MQ=35) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAggg > 2:1144057/1‑150 (MQ=17) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAggg > 1:154015/1‑150 (MQ=38) accaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTAAACCGTGACCCTGAGC‑ATCCGGTCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGc > 1:158229/4‑150 (MQ=11) acTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGc > 2:1196270/1‑150 (MQ=38) aCCGCGACTCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACTCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGTCGGCAAAACCCAGGGCAGc < 2:462651/150‑1 (MQ=255) cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGt > 1:569615/1‑150 (MQ=255) cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGt > 1:402406/1‑150 (MQ=255) gcgACCCTGACGGCGAGCCCATCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTc > 1:511823/1‑150 (MQ=11) cccTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAtt < 2:666419/150‑1 (MQ=35) cccTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAtt > 1:666419/1‑150 (MQ=35) ggCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCaaaa < 1:2285/125‑1 (MQ=255) ccGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCg > 2:448303/1‑150 (MQ=11) gTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGaa > 2:365418/1‑150 (MQ=255) ggTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGa < 2:402406/150‑1 (MQ=11) gTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc > 2:1096935/1‑150 (MQ=35) gTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGAc < 2:1077503/150‑1 (MQ=11) gTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGAc < 1:448303/150‑1 (MQ=11) aCCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGa > 1:39638/1‑98 (MQ=34) aCCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGa < 2:39638/98‑1 (MQ=34) cGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTa > 2:75334/1‑150 (MQ=255) cGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTa > 2:31587/1‑150 (MQ=255) gcggcgTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTacaaca > 1:693189/1‑150 (MQ=35) ggcgTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAAGCCGGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACaacaac > 1:1044502/1‑150 (MQ=11) gcgTGATCACTTACACCGTGACCCTGAGCAATACTG‑CTCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACg > 1:946660/1‑150 (MQ=25) gcgTGATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACg < 2:475082/150‑1 (MQ=255) gATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 1:960571/150‑1 (MQ=255) gATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 1:31587/150‑1 (MQ=255) gATCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 2:511823/150‑1 (MQ=11) aTCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGAc > 1:235041/1‑53 (MQ=38) aTCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGAc < 2:235041/53‑1 (MQ=35) tCACTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 1:700334/150‑1 (MQ=11) aCTTACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt < 2:569615/150‑1 (MQ=11) ttACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCCGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 2:99537/143‑1 (MQ=18) ttACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCCGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 1:99537/1‑143 (MQ=18) ttACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGAc > 2:655678/1‑127 (MQ=11) ttACACCGTGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGAc < 1:655678/127‑1 (MQ=11) acCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgt < 2:693189/150‑1 (MQ=37) tGACCCTGAGCAACCCTG‑CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCa < 2:311111/150‑1 (MQ=11) aCCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCAcc < 1:1196270/150‑1 (MQ=39) tGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGACCCATAACGGCAGCGACACCGGTTCGACTGTCAGTGTCCCCATCg > 2:104108/1‑150 (MQ=11) aGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCgag < 2:864823/150‑1 (MQ=39) gCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCgaga > 1:679076/1‑150 (MQ=38) tCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGc < 1:418157/150‑1 (MQ=38) aGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 2:923706/115‑1 (MQ=255) aGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc > 1:923706/1‑115 (MQ=11) tGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCg < 1:1096935/150‑1 (MQ=255) | CTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTG‑CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCG > NC_002947/196178‑196472 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |