| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 202,318 | Δ1 bp | 15.4% | coding (7824/26049 nt) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 202,318 | 0 | C | . | 15.4% | 62.8 / 8.5 | 26 | coding (7824/26049 nt) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (13/9); new base . (2/2); total (15/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 | |||||||||||
CACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCG‑‑CGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGCAACCGCC > NC_002947/202186‑202462 | cACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCG‑‑CGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTacac > 2:323594/1‑150 (MQ=32) cTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCG‑‑CGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCAccc > 1:73271/1‑150 (MQ=32) tgGATGTAGACGGTCACATCTTCGAGCCCCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCG‑‑CGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGa < 2:73271/150‑1 (MQ=12) tAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCG‑‑CGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACcaaca < 2:14099/150‑1 (MQ=32) acacCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCG‑‑CGACCCCTTCGGTCACCGAAGGCGGTGAGATCAc > 2:378740/1‑118 (MQ=33) acacCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCG‑‑CGACCCCTTCGGTCACCGAAGGCGGTGAGATCAc < 1:378740/118‑1 (MQ=33) cacCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCG‑‑CGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCt > 1:115426/1‑150 (MQ=35) ttCGAGAACCTGCAACTGGGCGGCCACGCTTCGGTTCAAGTGACTGACACCCTCGACGAGGTGGTGGCGAAGCTGACCG‑‑CGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCg > 1:9793/1‑150 (MQ=25) cTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGCCGTTTCCCGTTCGATCCAGGTGG‑‑ACCGAAGGCGGGGAGATCACCTACAACACCACCGTTATAGACATAGTCGGTCTGCCGATCAACAACCACTCg < 1:323594/150‑1 (MQ=2) ggcAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCG‑‑CGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTg > 1:169181/1‑150 (MQ=35) gcAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCG‑‑CGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGt > 1:57417/1‑150 (MQ=35) gTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCG‑‑CGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGAc < 2:115426/150‑1 (MQ=35) gACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCG‑‑CGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACgg < 1:314526/150‑1 (MQ=35) gACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCG‑‑CGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACgg < 2:57417/150‑1 (MQ=34) cGACACCCTCGACGAGGTGGTGGCGAAGCTGACCG‑‑CGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACgg > 1:244644/1‑99 (MQ=38) cGACACCCTCGACGAGGTGGTGGCGAAGCTGACCG‑‑CGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACgg < 2:244644/99‑1 (MQ=38) cacCCTCGACGAGGTGGTGGCGAAGCTGACCG‑‑CGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGcaccac > 2:314791/1‑150 (MQ=35) cTCGACGAGGTGGTGGCGAAGCTGACCG‑‑CGACCCCTTCGGTCACCGAAGGCGGt < 1:302174/54‑1 (MQ=38) cTCGACGAGGTGGTGGCGAAGCTGACCG‑‑CGACCCCTTCGGTCACCGAAGGCGGt > 2:302174/1‑54 (MQ=38) tCGACGAGGTGGTGGCGAAGCTGACCG‑‑CGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACcgtcg > 1:147392/1‑150 (MQ=38) tcaccgccTTCGGTCACCGAAGG‑GGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGcac < 1:347778/136‑1 (MQ=12) tcaccgccTTCGGTCACCGAAGG‑GGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGcac > 2:347778/7‑142 (MQ=255) accgccTTCGGTCACCGAAGG‑GGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAg < 2:46608/95‑1 (MQ=255) accgccTTCGGTCACCGAAGG‑GGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAg > 1:46608/5‑99 (MQ=255) ttCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCAc > 1:101445/1‑150 (MQ=32) gAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGCAACCGcc > 2:272152/1‑150 (MQ=11) | CACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCG‑‑CGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGCAACCGCC > NC_002947/202186‑202462 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |