New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3787854	11 (0.680)	3 (0.190)	3/250	NT	20.9%	coding (824/1392 nt)	PP_3350	hypothetical protein
	?	NC_002947	= 3787883	12 (0.760)					coding (795/1392 nt)	PP_3350	hypothetical protein

ATCGATGCGCATGGCCAGGCGCGGTTGCCAGGGGTGGGTGAAGGTGAAGCCGCTGTCGCTCGACAGCGCCCAGGCGCGGATCGACGCGTTGCCCAGGTGGCCGGTCTGCCCGACGAGGTTCCAGCTCCAGTCCAGTGCCTGATGGCGGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3787703‑3787854 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaGCAGCGCTACACTTTCGGCACGCGGCTGTTCGGCCGCCATCA  <  NC_002947/3787883‑3787842                                                                                                                                                                                                    ATCGATGCGCATGGCCAGGCGCGGCCCGTAGCGGTGGGTGAAGGTGAAGCCGCTGTCGCTCGACAGCGCCCAGGCGCGGATCGACGCGTTGCCCAGGTGGCCGGTCTGCCCGACGAGGTTCCAGCCCCAGTCCAGTGCCTGATGGCGGCC                                              <  1:14/150‑1                                             TGAAGCCGCTGTCGCTCGACAGCGCCCAGGCGCGGATCGACGCGTTGCCCAGGTGGCCGGTCTGCCCGACGAGGTTCCAGCTCCAGTCCAGTGCCTGATGGCGGCCGAGCAGCGCTACACTTTCGGCACGCGGCTGTTCGGCCGCCATCA  <  1:290831/150‑1                                                                                             CCAGGTGGCCGGTCTGCCCGACGAGGTTCCAGCTCCAGTCCAGTGCCTGATGGCGGCCGAGCAGCGCTACACTTTCGGCACGCGGCTGTTCG            >  1:23245/1‑92                                                                                             CCAGGTGGCCGGTCTGCCCGACGAGGTTCCAGCTCCAGTCCAGTGCCTGATGGCGGCCGAGCAGCGCTACACTTTCGGCACGCGGCTGTTCG            <  2:23245/92‑1                                                                                                                                                                                                    ATCGATGCGCATGGCCAGGCGCGGTTGCCAGGGGTGGGTGAAGGTGAAGCCGCTGTCGCTCGACAGCGCCCAGGCGCGGATCGACGCGTTGCCCAGGTGGCCGGTCTGCCCGACGAGGTTCCAGCTCCAGTCCAGTGCCTGATGGCGGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3787703‑3787854 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaGCAGCGCTACACTTTCGGCACGCGGCTGTTCGGCCGCCATCA  <  NC_002947/3787883‑3787842

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.