New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3833927 =	12 (0.740)	4 (0.260)	4/242	NT	25.5%	coding (549/2178 nt)	vgrG‑II	type VI secretion system protein
	?	NC_002947	3833958 =	12 (0.780)					coding (580/2178 nt)	vgrG‑II	type VI secretion system protein

TAACGCAAGCGCCGCAGGCAAGGCCTGGCCTGATCGCCGCCTCCAACGGATCGGTACAGCACCTGATCGGGGCCCACGTCGTCATTGTGAAACCCTTCATCCTCATCATCGGTCTTGATGGCCCCCCGGCTGATCTGGCCCAGCGCCAG‑‑CAGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3834082‑3833927 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccggGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGATCAG  >  NC_002947/3833958‑3834020                                                                                                                                                                                                                               TAACGCAAGCGCCGCAGGCAAGGCCTGGCCTGATCGCCGCCTCCAACGGATCGGTACAGCACCTGATCGGGGCCCACGTCGTCATTGTGAAACCCTTCATCCTCATCATCGGTCTTGATGGCCCCCCGGCTGATCTGGCCCAGCGCCAG‑‑C                                                                       >  1:268273/1‑150                                                   TCGGTACAGCACCTGATCGGGGCCCACGTCGTCATTGTGAAACCCTTCATCCTCATCATCGGTCTTGATGGCCCCCCGGCTG‑‑CTGGCGCTGGGCCAGATCAGCCGGGGGGCCATCAAGACCGATGATGA                                          >  1:135710/1‑129                                                   TCGGTACAGCACCTGATCGGGGCCCACGTCGTCATTGTGAAACCCTTCATCCTCATCATCGGTCTTGATGGCCCCCCGGCTG‑‑CTGGCGCTGGGCCAGATCAGCCGGGGGGCCATCAAGACCGATGATGA                                          <  2:135710/129‑1                                                                                                                                GGCTGATCTGGCCCAGCGCCAG‑‑CAGCCGGGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGATCAG  >  1:16649/1‑92                                                                                                                                GGCTGATCTGGCCCAGCGCCAG‑‑CAGCCGGGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGATCAG  <  2:16649/92‑1                                                                                                                                                                                                                               TAACGCAAGCGCCGCAGGCAAGGCCTGGCCTGATCGCCGCCTCCAACGGATCGGTACAGCACCTGATCGGGGCCCACGTCGTCATTGTGAAACCCTTCATCCTCATCATCGGTCTTGATGGCCCCCCGGCTGATCTGGCCCAGCGCCAG‑‑CAGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3834082‑3833927 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccggGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGATCAG  >  NC_002947/3833958‑3834020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.