New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4318388 =	20 (1.240)	5 (0.320)	4/246	NT	23.7%	coding (605/1221 nt)	PP_3789	efflux transporter
	?	NC_002947	4318412 =	13 (0.840)					coding (629/1221 nt)	PP_3789	efflux transporter

CTTGGTTGGCAGGGTACTGATACAGCAACCACAGGGACAGGAAGAACGTGAAGCGACCGTGAACGACGGTGTTAAAGAATGACCCCAAGGTATAGAGAACCAGATTTCGATCGTTGCCCAAGACTTTCAGGGCGTCCGCCAAT‑GAGGGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4318540‑4318388 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccTGAAAGTCTTGGGCAACGATCGAAATCTGGTTCTCTATACCTTGGGGTCATTCTTTAACACCGTCGTTCACGGTCGCTTCACGTTCTTCCTGTCCCTGTGGTTGCTGT  >  NC_002947/4318412‑4318519                                                                                                                                                                                                                                                                        CTTGGTTGGCAGGGTACTGATACAGCAACCACAGGGACAGGAAGAACGTGAAGCGACCGTGAACGACGGTGTTAAAGAATGACCCCAAGGTATAGAGAACCAGATTTCGATCGTTGCCCAAGACTTTCAGGGCGTCCGCCAAT‑GAGGGCG                                                                                                                 >  2:352609/1‑150                ACTGATACAGCAACCACAGGGACAGGAAGAACGTGAAGCGACCGTGAACGACGGTGTTAAAGAATGACCCCAAGGTATAGAGAACCAGATTTCGATCGTTGCCCAAGACTTTCAGGGCG‑CCCTCATTGGCGGACGCCCTGAAAGTCTTGG                                                                                                  <  2:243480/150‑1                                                                                                                                   GGCGTCCGCCAAT‑GAGGGCGCCCTGAAAGTCTTGGGCAACGATCGAAATCTGGTTCTCTATACCTTGGGGTCATTCTTTAACACCGTCGTTCACGGTCGCTTCACGTTCTTCCTGTCCCTGTGGTTGCTGT  <  1:183478/131‑1                                                                                                                                   GGCGTCCGCCAAT‑GAGGGCGCCCTGAAAGTCTTGGGCAACGATCGAAATCTGGTTCTCTATACCTTGGGGTCATTCTTTAACACCGTCGTTCACGGTCGCTTCACGTTCTTCCTGTCCCTGTGGTTGCTGT  >  2:183478/1‑131                                                                                                                                   GGCGTCCGCCAAT‑GAGGGCGCCCTGAAAGTCTTGGGCAACGATCGAAATCTGGTT                                                                              >  1:348422/1‑55                                                                                                                                   GGCGTCCGCCAAT‑GAGGGCGCCCTGAAAGTCTTGGGCAACGATCGAAATCTGGTT                                                                              <  2:348422/55‑1                                                                                                                                                                                                                                                                        CTTGGTTGGCAGGGTACTGATACAGCAACCACAGGGACAGGAAGAACGTGAAGCGACCGTGAACGACGGTGTTAAAGAATGACCCCAAGGTATAGAGAACCAGATTTCGATCGTTGCCCAAGACTTTCAGGGCGTCCGCCAAT‑GAGGGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4318540‑4318388 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccTGAAAGTCTTGGGCAACGATCGAAATCTGGTTCTCTATACCTTGGGGTCATTCTTTAACACCGTCGTTCACGGTCGCTTCACGTTCTTCCTGTCCCTGTGGTTGCTGT  >  NC_002947/4318412‑4318519

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.