New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4552017	3 (0.190)	4 (0.330)	4/190	NT	60.5%	intergenic (+67/+114)	pydA/rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
	?	NC_002947	= 4552068	3 (0.250)					intergenic (+118/+63)	pydA/rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family

CAGATCACCTGCCCGGTGGAAAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4551840‑4552017 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcggccttgtgtcgcgatcgggccgcGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGGCCGCTCCCACAGGGGCCGCGTCAGCTGTTCAGGCGGTGACCCGCTTCAACTGGCCTCACGGTAGGGGTTACGC  <  NC_002947/4552068‑4551923                                                                                                                                                                                                                                                                                                                                      CAGATCACCTGCCCGGTGGAAAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGG                                                                                                                                                                                >  1:331939/1‑150                          GCAACGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCTTATAACCCCTGCCGTGAGGCTAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGC                                                                                                                                                       <  1:364951/150‑1                                                     GCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTAT                                                                                                                            >  2:218164/1‑150                                                                                       TAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCC                                                                                          <  1:218164/150‑1                                                                                            CCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCG                                                                                     >  2:8789/1‑150                                                                                               ACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGA                                                                                  <  1:8789/150‑1                                                                                                                                                               TTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGGCCGCTCCCACAGGGGCCGCGTCAGCTGTTCAGGCGGTGACCCGCTTCAACTGGCCTC                  >  2:40920/1‑150                                                                                                                                                                 GTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGGCCGCTCCCACAGGGGCCGCGTCAGCTGTTCAGGCGGTGACCCGCTTCAACTGGCCTCAC                >  2:331939/1‑150                                                                                                                                                                               CCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGGCCGCTCCCACAGGGGCCGCGTCAGCTGTTCAGGCGGTGACCCGCTTCAACTGGCCTCACGGTAGGGGTTACGC  >  1:205615/1‑150                                                                                                                                                                                                                                                                                                                                      CAGATCACCTGCCCGGTGGAAAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4551840‑4552017 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcggccttgtgtcgcgatcgggccgcGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGGCCGCTCCCACAGGGGCCGCGTCAGCTGTTCAGGCGGTGACCCGCTTCAACTGGCCTCACGGTAGGGGTTACGC  <  NC_002947/4552068‑4551923

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.