| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5756736 | 24 (1.480) | 3 (0.210) | 3/230 | NT | 12.6% | intergenic (+357/‑331) | glnG/PP_5050 | two‑component system DNA‑binding response regulator GlnL/GlnG/transposase |
| ? | NC_002947 | = 5756764 | 20 (1.380) | intergenic (+385/‑303) | glnG/PP_5050 | two‑component system DNA‑binding response regulator GlnL/GlnG/transposase | |||||
ATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5756619‑5756736‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctcctacGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCCCGATATGT < NC_002947/5756764‑5756617 ATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGC > 1:99246/1‑112ATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGC < 2:99246/112‑1 CGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGC < 2:210770/150‑1 GGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGG > 2:90813/1‑150 GGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGGG < 1:90813/150‑1 GAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAA < 2:71507/89‑1 ACCCGCTCCTACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGAC < 2:364631/150‑1 CCCGCTCCTACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCGCGGCCTCTTCGCGGGTGAACCCGCTCCTA < 1:265732/142‑1 CCCGCTCCTACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCGCGGCCTCTTCGCGGGTGAACCCGCTCCTA > 2:265732/1‑142 CTCCTACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGCTGAACGGCA < 1:124426/87‑1 CTCCTACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGCTGAACGGCA > 2:124426/1‑87 CCTACGACGCCCGCGATGTGTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCCCGATA < 2:301605/150‑1 CTACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGGGTTTACGCGCGAATACGGTGGCGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCGCGGC > 1:66590/1‑110 CTACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCGCGGC < 2:66590/110‑1 ACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCCCGATATGT < 2:264010/150‑1 ATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5756619‑5756736‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctcctacGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCCCGATATGT < NC_002947/5756764‑5756617 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |