| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5773524 = | 29 (1.790) | 4 (0.260) | 4/248 | NT | 12.1% | coding (31/657 nt) | betI | choline‑responsive transcriptional repressor BetI |
| ? | NC_002947 | 5773557 = | 30 (1.910) | coding (64/657 nt) | betI | choline‑responsive transcriptional repressor BetI | |||||
CCGCCTGCAATGTGGCTTCGATCAACTGCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5773557‑5773524‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCG > NC_002947/5773557‑5773645 CCGCCTGCAATGTGGCTTCGATCAACTGCTGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCTCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCG < 1:3117/123‑1CCGCCTGCAATGTGGCTTCGATCAACTGCTGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCTCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCG > 2:3117/1‑123 CCTGCAATGTGGCTTCGATCAACTGCTGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTG < 1:377613/89‑1 CCTGCAATGTGGCTTCGATCAACTGCTGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTG > 2:377613/1‑89 CCGCCTGCAATGTGGCTTCGATCAACTGCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5773557‑5773524‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCG > NC_002947/5773557‑5773645 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |