New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5920482 =	18 (1.110)	4 (0.260)	4/244	NT	19.9%	coding (1012/1674 nt)	PP_5190	type II secretion system protein
	?	NC_002947	5920517 =	15 (0.970)					coding (1047/1674 nt)	PP_5190	type II secretion system protein

CCAGCGCGGGCTGCACCTGCAACTGGTTGAAGGCTGGCTCCAGGCGCTCGATCGGGTCTTCGATGGTGCACAGGTTGACCTGTGGTGTGGCCAGCAGTTTGAGGCTGGTGTACAGCGTGCTGGTCTTGCCGGAGCCGGTGGGGCCGGTGACCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5920635‑5920482 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaccagCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGA  >  NC_002947/5920517‑5920588                                                                                                                                                                                                                                    CCAGCGCGGGCTGCACCTGCAACTGGTTGAAGGCTGGCTCCAGGCGCTCGATCGGGTCTTCGATGGTGCACAGGTTGACCTGTGGTGTGGCCAGCAGTTCGAGGCTGGTGTACAGCGTGCTGGTCTTGCCGGAGCCGGTGGGGCCGGTGA                                                                              <  1:70492/150‑1                                                                                                             TGTACAGCGTGCTGGTCTTGCCGGAGCCGGTGGGGCCGGTGACCAGCACGCTGTACACCAGCCTCAAACTGCT                                               >  1:136988/1‑73                                                                                                             TGTACAGCGTGCTGGTCTTGCCGGAGCCGGTGGGGCCGGTGACCAGCACGCTGTACACCAGCCTCAAACTGCT                                               <  2:136988/73‑1                                                                                                                         TGGTCTTGCCGGAGCCGGTGGGGCCGGTGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGA  <  2:27934/106‑1                                                                                                                         TGGTCTTGCCGGAGCCGGTGGGGCCGGTGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGAGCACCATCGAAGACCCGATCGA  >  1:27934/1‑106                                                                                                                                                        CAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTTGACCTGTGgt                     <  1:88149/56‑3                                                                                                                                                        CAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTTGACCTGTGgt                     >  2:88149/1‑54                                                                                                                                                                                                                                    CCAGCGCGGGCTGCACCTGCAACTGGTTGAAGGCTGGCTCCAGGCGCTCGATCGGGTCTTCGATGGTGCACAGGTTGACCTGTGGTGTGGCCAGCAGTTTGAGGCTGGTGTACAGCGTGCTGGTCTTGCCGGAGCCGGTGGGGCCGGTGACCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5920635‑5920482 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaccagCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGA  >  NC_002947/5920517‑5920588

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.