New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1487013 =	5 (0.310)	5 (0.400)	5/196	NT	56.1%	intergenic (+22/+108)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
	?	NC_002947	1487103 =	4 (0.320)					intergenic (+112/+18)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS

GAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTG‑T‑TCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATT  >  NC_002947/1486874‑1487125                                                                                                                                              |                                                                                                                 gAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGATATCATCATTAAG‑‑CCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGG                                                                                                        >  2:346034‑M1/1‑150 (MQ=255) gAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTG‑T‑TCCTCAGCCAGATCCTGCATTGATAAAGATTGGGCTGCGCGGCAGCCCTTCGCGG                                                                                                        <  1:346034‑M1/150‑1 (MQ=255)         gcccaacgagaagataaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcaGCCCTTCGCGGGCACGc                                                                                                  <  2:19953‑M1/17‑1 (MQ=255)                      cAAGGGCGAGTTTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTG‑T‑TCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGtt                                                                                   >  1:171577/1‑150 (MQ=255)                           catcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAg                                                                                <  1:268082‑M1/35‑1 (MQ=255)                                                         gaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCtgt                                                  >  1:280795‑M1/86‑150 (MQ=255)                                                          cttcttCGACCGGCCGCGCAGTGACCGGACCAAGTTG‑T‑TCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGaattacgcaggctccaaagccagcgctaaacctgtggg                                               <  2:34892‑M1/150‑39 (MQ=255)                                                           ttcttcGACCGGCCGCGCAGTGACCGGACCAAGTTG‑T‑TCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGaattacgcaggctccaaagccagcgctaaacctgtgg                                                <  1:229787‑M1/148‑38 (MQ=255)                                                           ttcttcGACCGGCCGCGCAGTGACCGGACCAAGTTG‑T‑TCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGaattacgcaggctccaaagccagcgctaaacctgtgg                                                >  2:229787‑M1/1‑111 (MQ=255)                                                             ctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcaGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGa                                              >  1:19953‑M1/82‑150 (MQ=255)                                                                 gACCGGCCGCGCAGTGACCGGACCAAGTTG‑T‑TCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAgc                                                                               <  2:401444/111‑1 (MQ=255)                                                                 gACCGGCCGCGCAGTGACCGGACCAAGTTG‑T‑TCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAgc                                                                               >  1:401444/1‑111 (MQ=255)                                                                      gCCGCGCAGTGACCGGACCAAGTTG‑T‑TCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTcctgtgggagcgggcgtgcc                                   <  1:374943‑M2/150‑21 (MQ=255)                                                                               ctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAg                            >  2:268082‑M1/64‑150 (MQ=255)                                                                                                  tCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTgg         <  2:171577/150‑1 (MQ=255)                                                                                                     tCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGaattacgcaggctccaaagccagcgctaaacctgt                                                  >  1:163132‑M1/1‑71 (MQ=255)                                                                                                     tCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGaattacgcaggctccaaagccagcgctaaacctgt                                                  <  2:163132‑M1/106‑36 (MQ=255)                                                                                                         ccAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTAtt  >  2:287711/1‑150 (MQ=255)                                                                                                              aggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTgg                                                <  2:125149‑M1/67‑1 (MQ=255)                                                                                                              aggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTgg                                                >  1:125149‑M1/33‑99 (MQ=255)                                                                                                                                              |                                                                                                                 GAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTG‑T‑TCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATT  >  NC_002947/1486874‑1487125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.