| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3602262 | 16 (0.990) | 4 (0.260) | 4/244 | NT | 20.9% | coding (936/1170 nt) | PP_3177 | hypothetical protein |
| ? | NC_002947 | = 3602291 | 15 (0.970) | coding (965/1170 nt) | PP_3177 | hypothetical protein | |||||
GTTACGCCGTGGTTACCGCCGGGTGCGTGACTTGCTGGCCTACGGCCGTGAGGTATTGCCCAGCGAACGATTGCTCAGCCTGCAGCGATACCGGCTGCCGGCGCTGCTGTGGCGCCACCGTAACGACGACGCGCTGGACGAGCTGCTGGAGCCGTTGCAGCGCATCCGCGCCAAGGACAGCAGTGGCCAGTTACTCGCTACCCTGCGCGCCTGGTGTGCCCATGACGGCCAGAGCCAGTCCTGTGCCGATGCCCTGGGCATCCACCGCAACAGCCTGCGCTATCGA > NC_002947/3602115‑3602400 | gTTACGCCGTGGTTACCGCCGGGTGCGTGACTTGCTGGCCTACGGCCGTGAGGTATTGCCCAGCGAACGATTGCTCAGCCTGCAGCGATACCGGCTGCCGGCGCTGCTGTGGCGCCACCGTAACGACGACGCGCTGGACGAGCTGCTGGa < 1:249854/150‑1 (MQ=255) cGTGGTTACCGCCGGGTGCGTGACTTGCTGGCCTACGGCCGTGAGGTATTGCCCAGCGAACGATTGCTCAGCCTGCAGCGATACCGGCTGCCGGCGCTGCTGTGGCGCCACCGTAACGACGACGCGCTGGACGAGCTGCTGGAGCCGTTg > 1:260973/1‑150 (MQ=255) cGTGGTTACCGCCGGGTGCGTGACTTGCTGGCCTACGGCCGTGAGGTATTGCCCAGCGAACGATTGCTCAGCCTGCAGCGATACCGGCTGCCGGCGCTGCTGTGGCGCCACCGTAACGACGACGCGCTGGACGAGCTGCTGGAGCCGTTg > 2:269934/1‑150 (MQ=255) gTGGTTACCGCCGGGTGCGTGACTTGCTGGCCTACGGCCGTGAGGTATTGCCCAGCGAACGATTGCTCAGCCTGCAGCGATACCGGCTGCCGGCGCTGCTGTGGCGCCACCGTAACGACGACGCGCTGGACGAGCTGCTGGAGCCGTTGc < 2:260973/150‑1 (MQ=255) tGACTTGCTGGCCTACGGCCGTGAGGTATTGCCCAGCGAACGATTGCTCAGCCTGCAGCGATACCGGCTGCCGGCGCTGCTGTGGCGCCACCGTAACGACGACGCGCTGGACGAGCTGCTGGAGCCGTTGCAGCGCATCCGCGCCAAGGa < 1:312282/150‑1 (MQ=255) cTACGGCCGTGAGGTATTGCCCAGCGAACGATTGCTCAGCCTGCAGCGATACCGGCTGCCGGCACTGCTGTGGCGCCACCGTAACGACGACGCGCTGGACGAGCTGCTGtccttggcgcggatgcgctgcaacggctccagcagctc > 1:269034‑M1/1‑109 (MQ=255) cTACGGCCGTGAGGTATTGCCCAGCGAACGATTGCTCAGCCTGCAGCGATACCGGCTGCCGGCACTGCTGTGGCGCCACCGTAACGACGACGCGCTGGACGAGCTGCTGtccttggcgcggatgcgctgcaacggctccagcagctc < 2:269034‑M1/147‑39 (MQ=255) gCCCAGCGAACGATTGCTCAGCCTGCAGCGATACCGGCTGCCGGCGCTGCTGTGGCGCCACCGTAACGACGACGCGCTGGACGAGCTGCTGGAGCCGTTGCAGCGCATCCGCGCCAAGGACAGCAGTGGCCAGTTACTCGCTACCCTgcg > 1:157510/1‑150 (MQ=255) cccAGCGAACGATTGCTCAGCCTGCAGCGATACCGGCTGCCGGCGCTGCTGTGGCGCCACCGTAACGACGACGCGCTGGACGAGCTGCTGtccttggcgcggatgcgctgcaacggctccagcagc < 1:419274‑M1/126‑37 (MQ=255) cccAGCGAACGATTGCTCAGCCTGCAGCGATACCGGCTGCCGGCGCTGCTGTGGCGCCACCGTAACGACGACGCGCTGGACGAGCTGCTGtccttggcgcggatgcgctgcaacggctccagcagc > 2:419274‑M1/1‑90 (MQ=255) aaCGATTGCTCAGCCTGCAGCGATACCGGCTGCCGGCGCTGCTGTGGCGCCACCGTAACGACGACGCGCTGGACGAGCTGCTGGAGCCGTTGCAGCGCATCCGCGCCAAGGACAGCAGTGGCCAGTTACTCGCTACCCTGCGCGCCTGgt > 1:135850/1‑150 (MQ=255) aGCCTGCAGCGATACCGGCTGCCGGCGCTGCTGTGGCGCCACCGTAACGACGACGCGCTGGACGAGCTGCTGGAGCCGTTGCAGCGCATCCGCGCCAAGGACAGCAGTGGCCAGTTACTCGCTACCCTGCGCGCCTGGTGTGCCCATGAc > 1:416855/1‑150 (MQ=255) ggCTGCCGGCGCTGCTGTGGCGCCACCGTAACGACGACGCGCTGGACGAGCTGCTGGAGCCGTTGCAGCGCATCCGCGCCAAGGACAGCAGTGGCCAGTTACTCGCTACCCTGCGCGCCTGGTGTGCCCATGACGGCCAGAGCCAGTCCt < 2:157510/150‑1 (MQ=255) cgcCACCGTAACGACGACGCGCTGGACGAGCTGCTGGAGCCGTTGCAGCGCATCCGCGCCAAGGACAGCAGTGGCCAGTTACTCGCTACCCTGCGCGCCTGGTGTGCCCATGACGGCCAGAGCCAGTCCTGTGCCGATGCCCTGGGCATc < 2:135850/150‑1 (MQ=255) gTAACGACGACGCGCTGGACGAGCTGCTGGAGCCGTTGCAGCGCATCCGCGCCAAGGACAGCAGTGGCCAGTTACTCGCTACCCTGCGCGCCTGGTGTGCCCATGACGGCCAGAGCCAGTCCTGTGCCGATGCCCTGGGCATCCACCGCa > 1:30897/1‑150 (MQ=255) gcTGGACGAGCTGCTGGAGCCGTTGCAGCGCATCCGCGCCAAGGACAGCAGTGGCCAGTTACTCGCTACCCTGCGCGCCTGGTGTGCCCATGACGGCCAGAGCCAGTCCTGTGCCGATGCCCTg < 2:224571/124‑1 (MQ=255) gcTGGACGAGCTGCTGGAGCCGTTGCAGCGCATCCGCGCCAAGGACAGCAGTGGCCAGTTACTCGCTACCCTGCGCGCCTGGTGTGCCCATGACGGCCAGAGCCAGTCCTGTGCCGATGCCCTg > 1:224571/1‑124 (MQ=255) cTGGACGAGCTGCTGGAGCCGTTGCAGCGCATCCGCGCCAAGGACAGCAGTGGCCAGTTACTCGCTACCCTGCGCGCCTGGTGTGCCCATGACGGCCAGAGCCAGTCCTGTGCCGATGCCCTGGGCATCCACCGCAACAGCCTGCGCTAt < 1:269934/150‑1 (MQ=255) tGGACGAGCTGCTGGAGCCGTTGCAGCGCATCCGCGCCAAGGACAGCAGTGGCCAGTTACTCGCTACCCTGCGCGCCTGGTGTGCCCATGACGGCCAGAGCCAGTCCTGTGCCGATGCCCTGGGCATCCACCGCAACAGCCTGCGCTATc < 2:416855/150‑1 (MQ=255) gACGAGCTGCTGGAGCCGTTGCAGCGCATCCGCGCCAAGGACAGCAGTGGCCAGTTACTCGCTACCCTGCGCGCCTGGTGTGCCCATGACGGCCAGAGCCAGTCCTGTGCCGATg < 1:405618/115‑1 (MQ=255) gACGAGCTGCTGGAGCCGTTGCAGCGCATCCGCGCCAAGGACAGCAGTGGCCAGTTACTCGCTACCCTGCGCGCCTGGTGTGCCCATGACGGCCAGAGCCAGTCCTGTGCCGATg > 2:405618/1‑115 (MQ=255) gAGCTGCTGGAGCCGTTGCAGCGCATCCGCGCCAAGGAcagcagctcgtccagcgcgtcgtcgttacggtggcgccacagcagtgccggcagccggtatcgctgcaggctgagcaatcgttcgctgggcaatacctcacggccgtag < 2:269034‑M2/147‑110 (MQ=255) gAGCTGCTGGAGCCGTTGCAGCGCATCCGCGCCAAGGAcagcagctcgtccagcgcgtcgtcgttacggtggcgccacagcagtgccggcagccggtatcgctgcaggctgagcaatcgttcgctgggcaatacctcacggccgtag > 1:269034‑M2/1‑38 (MQ=255) gctgctGGAGCCGTTGCAGCGCATCCGCGCCAAGGAcagcagctcgtccagcgcgtcgtcgttacggtggcgccacagcagcgccggcagccggtatcgctgcaggctgagcaatcgttcgctggg < 1:419274‑M2/126‑91 (MQ=255) gctgctGGAGCCGTTGCAGCGCATCCGCGCCAAGGAcagcagctcgtccagcgcgtcgtcgttacggtggcgccacagcagcgccggcagccggtatcgctgcaggctgagcaatcgttcgctggg > 2:419274‑M2/1‑36 (MQ=255) | GTTACGCCGTGGTTACCGCCGGGTGCGTGACTTGCTGGCCTACGGCCGTGAGGTATTGCCCAGCGAACGATTGCTCAGCCTGCAGCGATACCGGCTGCCGGCGCTGCTGTGGCGCCACCGTAACGACGACGCGCTGGACGAGCTGCTGGAGCCGTTGCAGCGCATCCGCGCCAAGGACAGCAGTGGCCAGTTACTCGCTACCCTGCGCGCCTGGTGTGCCCATGACGGCCAGAGCCAGTCCTGTGCCGATGCCCTGGGCATCCACCGCAACAGCCTGCGCTATCGA > NC_002947/3602115‑3602400 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |