| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3795313 | 18 (1.110) | 3 (0.190) | 3/248 | NT | 16.9% | coding (1184/1884 nt) | fcs | feruloyl‑CoA‑synthetase |
| ? | NC_002947 | = 3795375 | 12 (0.770) | coding (1122/1884 nt) | fcs | feruloyl‑CoA‑synthetase | |||||
GGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCT‑TGTCG‑CCCACCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGG‑TGGTGAAGGTGCACGATGGCGAGGCTTCGGTCATGCCAAGGCCGGCCATCATGCGGATGCGTTCGCCACAGTGTTGCTCGGCAATGCGGTCCAGCCGGTCCCAGACGCTTTGCGACAGGCCTGCGGCGGCAAAGAAGAACAGCTTGA > NC_002947/3795165‑3795457 | ggcggTCTCCTGCGCCAAGCCCCAGTAGCCCGGCATGATATGCGGGC‑‑CGGAGTTCAGACGTGTGCTCTTCCGATCCACCGGCACCAGCGCCACTTCGCACCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCgg‑tggt < 1:101851/150‑1 (MQ=255) ttCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCT‑TTTCG‑CCCACCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGG‑TGGTGagg < 1:75610/149‑3 (MQ=255) gctgcGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCT‑TGTCG‑CCCACCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGG‑TGGTGAAGGTGc > 1:335968/1‑150 (MQ=255) gcgcCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCT‑TGTCG‑CCCACCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGG‑TGGTGAAGGTGCACGATGGCGa < 2:290139/150‑1 (MQ=255) tGAGATGCGGGCCACAGAAGCGCGCCTCCAGCC‑TGTCG‑CCCCCCGGCACTAGCTCCAGTGCGGAGCCAGGTGCCGGCAGCCCGAAATAGCCGGCCATCGGCAAAGGGCCGGAAGGTGAA‑GTGCACGATCTCCAGGGTTCGGTCATGctgg > 2:4324/1‑147 (MQ=255) tGCGGGCCACGGAAGCGCGCCTCGAGCT‑TGTCG‑CCCACCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGG‑TGGTGAAGGTGCACGATGGCGAGGCTTCGGTCATGCCAAggccg < 2:290583/150‑1 (MQ=255) cGGGCCACGGAAGCGCGCCTCGAGCT‑TGTCG‑CCCACCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGG‑TGGTGAAGGTGCACGATGGCGAGGCTTCGGTCATGCCAAggccggc < 2:278848/150‑1 (MQ=255) cACGGAAGCGCGCCTCGAGCT‑TGTCG‑CCCACCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGG‑TGGTGAAGGTGCACGATGGCGAGGCTTCGGTCATGCCAAGGCCGGCcatca > 1:364875/1‑150 (MQ=255) gcgcCTCGAGCT‑TGTCG‑CCCACCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGG‑TGGTGAAGGTGCACGATGGCGAGGCTTCGGTCATGCCAAGGCCGGCCATCATGCGGATGc > 1:350410/1‑150 (MQ=255) t‑tGTCG‑CCCACCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGG‑TGGcgaacgcatccgcatgatggccggccttggcatgaccgaagcctcgccatcgtgcaccttcaccaccg < 2:225946‑M1/150‑69 (MQ=255) gTCG‑CCCACCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGG‑TGGTGAAGGTGCACGATGGCGAGGCTTCGGTCATGCCAAGGCCGGCCATCATGCGGATGCGTTCGCCACAgtg > 1:273192/1‑150 (MQ=255) gctaCCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGG‑TGGTGAAGGTGCACGATGGCGAGGCTTCGGTCATGCCAAGGCCGGCCATCATGc < 1:128727/124‑1 (MQ=255) gctaCCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGG‑TGGTGAAGGTGCACGATGGCGAGGCTTCGGTCATGCCAAGGCCGGCCATCATGc > 2:128727/4‑127 (MQ=255) cAGCTTCACTTCGCAGCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGG‑TGGTGAAGGTGCACGATGGCGAGGCTTCGGTCATGCCAAGGCCGGCCATCATGCGGATGCGTTCGCCACAGTGTTGCTCGGCAATGCg > 2:132576/1‑150 (MQ=255) aCTTCCCACCCAGGTGCCGCCAACCCGACATAGCCGGTCACCGACCAAAGCCCGG‑TGGTGAATGTGCACGATGGCGAGGCTTCGGTCATGCCAAGGCCGGCCATCATGCGGATGCGTTCGCCACAGTGTTGCTCGGCAATGCGGTCCAGc < 1:4324/150‑1 (MQ=255) ccAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGG‑TGGcgaacgcatccgcatgatggccggcct < 1:98562‑M1/76‑28 (MQ=255) ccAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGG‑TGGcgaacgcatccgcatgatggccggcct > 2:98562‑M1/1‑49 (MQ=255) gTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGG‑TGGGGAAGGTGCACGATGGCGAGGCTTCGGTCATGCCAAGGCCGGCCATCATGCGGATGCGTTCGCCACAGTGTTGCTCGGCAATGCGGTCCAGCCGGTCCCAGACGc > 2:39143/1‑150 (MQ=255) gCCCGACATAGCCGGCCATCGACAAAGGCCCGG‑TGGTGAAGGTGCACGATGGCGAGGCTTCGGTCATGCCAAGGCCGGCCATCATGCGGATGCGTTCGCCACAGTGTTGCTCGGCAATGCGGTCCAGCCGGTCCCAGACGCTTTGCGACa < 1:39143/150‑1 (MQ=255) cccGACATAGCCGGCCATCGACAAAGGCCCGG‑TGGTGAAGGTGCACGATGGCGAGGCTTCGGTCATGCCAAGGCCGGCCATCATGCGGATGCGTTCGCCACAGTGTTGCTCGGCAATGCGGt < 1:79827/122‑1 (MQ=255) cccGACATAGCCGGCCATCGACAAAGGCCCGG‑TGGTGAAGGTGCACGATGGCGAGGCTTCGGTCATGCCAAGGCCGGCCATCATGCGGATGCGTTCGCCACAGTGTTGCTCGGCAATGCGGt > 2:79827/1‑122 (MQ=255) gACATAGCCGGCCATCGACAAAGGCCCGG‑TGGTGAAGGTGCACGATGGCGAg < 2:209100/52‑1 (MQ=255) gACATAGCCGGCCATCGACAAAGGCCCGG‑TGGTGAAGGTGCACGATGGCGAg > 1:209100/1‑52 (MQ=255) cGG‑TGGTGAAGGTGCACGATGGCGAGGCTTCGGTCATGCCAAGGCCGGCCATCATGCGGATGCGTTCGccaccgggcctttgtcgatggccggctatgtcgggctgccggcacctggctgcgaagtgaagctggtgccggtgggcgacaa < 2:225946‑M2/150‑83 (MQ=255) | GGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCT‑TGTCG‑CCCACCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGG‑TGGTGAAGGTGCACGATGGCGAGGCTTCGGTCATGCCAAGGCCGGCCATCATGCGGATGCGTTCGCCACAGTGTTGCTCGGCAATGCGGTCCAGCCGGTCCCAGACGCTTTGCGACAGGCCTGCGGCGGCAAAGAAGAACAGCTTGA > NC_002947/3795165‑3795457 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |