New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4248757	25 (1.540)	3 (0.190)	3/246	NT	11.1%	coding (1314/2118 nt)	PP_3724	acyl‑CoA synthetase
	?	NC_002947	= 4248799	24 (1.540)					coding (1272/2118 nt)	PP_3724	acyl‑CoA synthetase

CCATTCGTCCAACAGTCGGCTTTCGCCCGTGAGGGCCTGCGGGCACAGCGGTACCCGCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACAGCCCCAGCAGCAGGTCGCATTCCTTGCGTTCG  >  NC_002947/4248610‑4248904                                                                                                                                                    |                                                                                                                                                    ccATTCGGCCAACAGTCGGCTTTCGCCCGTGAGGGCCTGCGGGCACAGCGGTACCCGCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGGTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAg                                                                                                                                                   >  1:288106/1‑150 (MQ=255)              aGTCGGCTTTCGCCCGTGAGGGCCTGCGGGCACAGCGGTACCCGCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGccc                                                                                                                                      >  2:199197/1‑150 (MQ=255)                  ggCTTTCGCCCGTGAGGGCCTGCGGGCACAGCGGTACCCGCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCcgcg                                                                                                                                  >  1:6451/1‑150 (MQ=255)                         gCCCGTGAGGGCCTGCGGGCACAGCGGTACCCGCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAg                                                                                                                           <  1:199197/150‑1 (MQ=255)                           ccGTGAGGGCCTGCGGGCACAGCGGTACCCGCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGgc                                                                                                                         >  2:303758/1‑150 (MQ=255)                                             accgcggTACCCGCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCcagtgcgcgtgagcgcctgcatgcgcggggcatcgctgccctgcag                                                                                                       <  1:96095‑M1/147‑47 (MQ=255)                                               aGCGGTACCCGCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTggcaggc                                                                                                     >  1:107928/1‑150 (MQ=255)                                                       ccGCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTc                                                                                             >  2:353268/1‑150 (MQ=255)                                                         gCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCg                                                                                           <  2:6451/150‑1 (MQ=255)                                                                     ccTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAgg                                                                               >  1:172343/1‑150 (MQ=255)                                                                       tGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGAGACGATGCGCGCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCTATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAgcag                                                                             >  2:121119/1‑147 (MQ=255)                                                                                 aCCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGa                                                                   <  1:207333/150‑1 (MQ=255)                                                                                      tGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCcagtgcgcgtgagcgcctgcatgcgcggggcatcgctgccctgcagggtgtg                                                                                                 <  1:169345‑M1/115‑53 (MQ=255)                                                                                      tGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCcagtgcgcgtgagcgcctgcatgcgcggggcatcgctgccctgcagggtgtg                                                                                                 >  2:169345‑M1/1‑63 (MQ=255)                                                                                             tCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGc                                                       <  1:369235/150‑1 (MQ=255)                                                                                                   ggTAAGCGAGGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCaa                                                 <  1:353268/150‑1 (MQ=255)                                                                                                          gacgaTGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATc                                          >  2:342396/1‑150 (MQ=255)                                                                                                             gaTGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCa                                       <  2:107928/150‑1 (MQ=255)                                                                                                              aTGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGAGCTTGCCGTGGCGTTCAACGGCATCGCAg                                      <  1:303758/150‑1 (MQ=255)                                                                                                                  gcCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACa                                  >  1:122604/1‑150 (MQ=255)                                                                                                                             gccaggccgTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACAGccc                              >  2:383/1‑143 (MQ=255)                                                                                                                             gccaggccgTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACAGccc                              <  1:383/143‑1 (MQ=255)                                                                                                                              ccaggccgTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACAGCCCcagcagca                      >  2:231310/1‑150 (MQ=255)                                                                                                                                    cgTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGgca                                                                                                        <  2:396310‑M2/62‑4 (MQ=255)                                                                                                                                    cgTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGgca                                                                                                        >  1:396310‑M2/1‑59 (MQ=255)                                                                                                                                    cgTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACAg                                 >  1:28370/1‑133 (MQ=255)                                                                                                                                    cgTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACAg                                 <  2:28370/133‑1 (MQ=255)                                                                                                                                    cgTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACAGCCCcagcagcag                     <  2:302816/145‑1 (MQ=255)                                                                                                                                    cgTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACAGCCCcagcagcag                     >  1:302816/1‑145 (MQ=255)                                                                                                                                           cacaCCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGgcagggtgtggaagacggcctggcggcctgggggcgcatcgtcgcttaccaaaagaaccgcca                                            <  1:169345‑M2/115‑64 (MQ=255)                                                                                                                                           cacaCCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGgcagggtgtggaagacggcctggcggcctgggggcgcatcgtcgcttaccaaaagaaccgcca                                            >  2:169345‑M2/1‑52 (MQ=255)                                                                                                                                           cacaCCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACAGCCCCAGCAGCAGGTCGCATTCCtt         <  1:231310/150‑1 (MQ=255)                                                                                                                                             cacCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACAGCCCCAGCAGCAGGTCGCATTCCTTGc       <  2:421984/150‑1 (MQ=255)                                                                                                                                                 cTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGgcagggtgtggaagacggcctggcggcctgggggcgcatcgtcgcttaccaaaagaaccgccagcggttgatggaccagggcgaggctgtgcgggtaccgcggt   <  1:96095‑M2/150‑105 (MQ=255)                                                                                                                                                  tGCcagtgcgcgtgagcgcctgcatgcgcggggcatcgctgccctgcagggtgtggaagacg                                                                                          >  1:396310‑M1/1‑3 (MQ=255)                                                                                                                                                  tGCcagtgcgcgtgagcgcctgcatgcgcggggcatcgctgccctgcagggtgtggaagacg                                                                                          <  2:396310‑M1/62‑60 (MQ=255)                                                                                                                                                  tGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGTACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACAGCCCCAGCAGCAGGTCGCATTCCTTGCGTTCg  >  1:425620/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CCATTCGTCCAACAGTCGGCTTTCGCCCGTGAGGGCCTGCGGGCACAGCGGTACCCGCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACAGCCCCAGCAGCAGGTCGCATTCCTTGCGTTCG  >  NC_002947/4248610‑4248904

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.