New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4573244	26 (1.610)	3 (0.190)	3/244	NT	10.4%	intergenic (+8/‑129)	PP_4054/glgX	hypothetical protein/glycogen debranching enzyme
	?	NC_002947	= 4573328	27 (1.750)					intergenic (+92/‑45)	PP_4054/glgX	hypothetical protein/glycogen debranching enzyme

GCTGGCGCCCAAGGCAGCCCCGCGCAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAG  >  NC_002947/4573095‑4573393                                                                                                                                                      |                                                                                                                                                      gcTGGCGCCCAAGGCAGCCCCGCGCAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCC                                                                                                                                                       >  2:45226‑M1/1‑150 (MQ=255)     gcgcCCAAGGCAGCCCCGCGCAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGc                                                                                                                                                   <  2:252290/150‑1 (MQ=255)           aaGGCAGCCCCGCGCAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTc                                                                                                                                             <  2:405066/150‑1 (MQ=255)             ggCAGCCCCGCGCAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTcgc                                                                                                                                           <  2:36882/150‑1 (MQ=255)             ggCAGCCCCGCGCAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTcgc                                                                                                                                           >  1:115313/1‑150 (MQ=255)                aGCCCCGCGCAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCggg                                                                                                                                        >  1:266587/1‑150 (MQ=255)                      gcgaAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAAcc                                                                                                                                  <  1:49017/150‑1 (MQ=255)                            gaagGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTcc                                                                                                                            >  2:411783/1‑150 (MQ=255)                              agGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTa                                                                                                                          <  2:68499/150‑1 (MQ=255)                               ggCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTAc                                                                                                                         >  2:421083/1‑150 (MQ=255)                                       ccAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTtcat                                                                                                                 <  2:52854/150‑1 (MQ=255)                                          aGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATcac                                                                                                              >  2:393740/1‑150 (MQ=255)                                                    gcCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATTACAGGCGCCTGt                                                                                                    >  1:52166/1‑150 (MQ=255)                                                      cTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCtgcattggccacttcgcgggtaaacccgctcctacatgcgcctgtgatgaacc                                                                                                  >  2:219402‑M1/1‑97 (MQ=255)                                                           gAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCtgcattggccacttcgcgggtaaacccgctcctacatgcgcctgtgatgaacctttag                                                                                             <  1:219402‑M1/150‑59 (MQ=255)                                                                 aaGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTTGCGGGTAAACCCCCTCCTACAGGGGCATCGCAGTCGCATGTAGGAGCGGGTTTa                                                                                       >  2:357514/1‑150 (MQ=39)                                                                 aaGGCGGCTGCCCTGCCGGGGGGTAAACCCACTGAGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTAGTTCCGGTTAAGCCGGGCCGGGGCGCTTCGCGGGTAGACCGGCACCGACAGGTTCATCACAGGCGCCTGTAGGAGCGGGTTTa                                                                                       >  1:199603/1‑150 (MQ=255)                                                                    gcggcTGCCCTGGCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTAccc                                                                                    <  1:151242/150‑1 (MQ=255)                                                                    gcggcTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTAccc                                                                                    <  1:151206/150‑1 (MQ=255)                                                                            cctgccGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGgcgc                                                                                                        >  2:94578/1‑122 (MQ=255)                                                                            cctgccGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGgcgc                                                                                                        <  1:94578/122‑1 (MQ=255)                                                                                  gggggTTAAACCCACTGCGGTGAAAATGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCAGTCGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAAt                                                                      <  1:250769/150‑1 (MQ=255)                                                                                      gTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAg                                                                  >  2:266587‑M2/1‑149 (MQ=255)                                                                                        tAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAgga                                                                >  1:393740‑M2/1‑147 (MQ=255)                                                                                        tAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAgga                                                                >  2:379760‑M2/1‑147 (MQ=255)                                                                                          aaCCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAGACATAGACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATTACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAggaca                                                              >  1:357514‑M2/1‑145 (MQ=255)                                                                                             ccACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCtgcattggccacttcgcgggtaaacccgctcctacatgcgcctgtgatgaacctgtaggagcgggtttacccgcgaagaggcccggacaggc                                                           <  2:323405‑M1/150‑93 (MQ=255)                                                                                                 tGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTTCAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAAt                                                       >  2:363811/1‑150 (MQ=255)                                                                                                   cGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTc                                                     <  1:53867/150‑1 (MQ=255)                                                                                                     gTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTccc                                                   <  2:267462/150‑1 (MQ=255)                                                                                                                ccGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAg                                                                  >  1:40372‑M2/1‑123 (MQ=255)                                                                                                                ccGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAg                                                                  <  2:40372‑M2/124‑2 (MQ=255)                                                                                                                             aaGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGAt                           >  2:5229/1‑150 (MQ=255)                                                                                                                                ccTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGa                               >  1:315390/1‑143 (MQ=255)                                                                                                                                ccTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGa                               <  2:315390/143‑1 (MQ=255)                                                                                                                                     tGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGa                   <  2:115313/150‑1 (MQ=255)                                                                                                                                          gTTAAGCCTGTCCGGGCCACTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGcccc              >  1:82115/1‑150 (MQ=255)                                                                                                                                               gCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAggacaggcttaaccggcagtaggctttttcaccgcccggggctttttcaccgcagtgg         <  2:323405‑M2/150‑59 (MQ=255)                                                                                                                                                  tGTCCtgcattggccacttcgcgggtaaacccgctcctacatgcgcctgtaatgaacctgtaggagcgggtttacccgcgaagaggcccggacaggcttaaccggcagtctatgtcttcaccgcccggggctttttcaccgcagtgggtt      >  1:357514‑M1/1‑5 (MQ=255)                                                                                                                                                    tCCtgcattggccacttcgcgggtaaacccgctcctacatgcgcctgtgatgaacctgtaggagcgggtttacccgcgaagaggcccggacaggcttaaccggcagtaggctttttcaccgcccggggctttttcaccgcagtgggttta    >  2:379760‑M1/1‑3 (MQ=255)                                                                                                                                                    tCCtgcattggccacttcgcgggtaaacccgctcctacatgcgcctgtgatgaacctgtaggagcgggtttacccgcgaagaggcccggacaggcttaaccggcagtaggctttttcaccgcccggggctttttcaccgcagtgggttta    >  1:393740‑M1/1‑3 (MQ=255)                                                                                                                                                     ccGTGCCACTTCGCGGGTACACCCGCTCCTACAAGTTCATCACAGGCGCGTGTAGGAGCGGGTTTACCCGCGAAGTGCCCAATGCAGGACAGCACAATTCCCCTTCCATCGCGGCCACTCTAGGATCGTCATGAGCCCCCGCACCCCaaa   <  1:411783/150‑1 (MQ=255)                                                                                                                                                     ccGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCaaa   <  2:401322/150‑1 (MQ=255)                                                                                                                                                      ctgcattggccacttcgcgggtaaacccgctcctacatgcgcctgtgatgaacctgtaggagcgggtttacccgcgaagaggcccggacaggcttaaccggcagtaggctttttcaccgcccggggctttttcaccgcagtgggtttaac  >  2:266587‑M1/1‑1 (MQ=255)                                                                                                                                                      ctgcattggccacttcgcgggtaaacccgctcctacatgcgcctgtgatgaacctgtaggagcgggtttacccgcgaagaggcccggacaggcttaaccggcagtaggctttttcaccgcccgg                            <  2:40372‑M1/124‑124 (MQ=255)                                                                                                                                                      ctgcattggccacttcgcgggtaaacccgctcctacatgcgcctgtgatgaacctgtaggagcgggtttacccgcgaagaggcccggacaggcttaaccggcagtaggctttttcaccgcccgg                            >  1:40372‑M1/1‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                      GCTGGCGCCCAAGGCAGCCCCGCGCAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAG  >  NC_002947/4573095‑4573393

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.