| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5382480 | 12 (0.740) | 3 (0.260) | 3/186 | NT | 20.9% | intergenic (+52/+81) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR |
| ? | NC_002947 | = 5382508 | 14 (1.190) | intergenic (+80/+53) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR | |||||
GCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCAC > NC_002947/5382353‑5382626 | gcgcGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGACCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCAc < 2:397259/135‑1 (MQ=255)gcgcGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGACCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCAc > 1:397259/1‑135 (MQ=255) cgcgAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACATGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtg > 2:92088‑M2/1‑143 (MQ=255) gcgAACACGATTCCAACCGCTAGCTGCAGCGGGGTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAtaggcgccgggcttgaatctggtgccattcctgtgg < 1:131280‑M1/150‑37 (MQ=255) cgAGTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcggg > 1:75260‑M2/1‑135 (MQ=255) ccGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCAc > 1:156931/1‑105 (MQ=255) ccGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCAc < 2:156931/105‑1 (MQ=255) gCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTCtcctgtgggagcgggcttgcccgcgaagaggcc < 2:128216‑M2/150‑34 (MQ=255) aCAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAtaggcgccgggcttgaatctggtgccattcctgt > 1:355913‑M1/1‑72 (MQ=255) aCAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAtaggcgccgggcttgaatctggtgccattcctgt < 2:355913‑M1/106‑35 (MQ=255) tactCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggc > 2:74903‑M2/1‑79 (MQ=255) tactCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggc < 1:74903‑M2/95‑17 (MQ=255) actCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGct > 1:309693/1‑150 (MQ=255) tctTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCCCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGctct > 2:421347/1‑150 (MQ=255) aaCCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAACAGCAGCAGATTCAAGCCCGACGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGTACCGCCCATAAAACCCTCAGCGCCCGCTGCGCCGCGCTGcccc > 1:103141/1‑149 (MQ=37) ggCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAgaggcgccgggcttgaatctggtgccattcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgcccttgttccgcacagcccgctgc < 2:128216‑M1/150‑118 (MQ=255) ctctTCGCGGGCAAGCCCGCTCTCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTgg < 2:103141/150‑1 (MQ=255) tctTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTggg > 2:346477/1‑150 (MQ=255) ttCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCt > 2:179106/1‑145 (MQ=255) ttCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCt < 1:179106/145‑1 (MQ=255) gCCCGCTCCCACAGGAtaggcgccgggcttgaatctggtgccattcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagta < 1:74903‑M1/95‑80 (MQ=255) gCCCGCTCCCACAGGAtaggcgccgggcttgaatctggtgccattcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagta > 2:74903‑M1/1‑16 (MQ=255) cccGCTCCCACAGGAtaggcgccgggcttgaatctggtgccattcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgcccttgttccgcacagcccgctgcagctcgcggttggactcg > 1:75260‑M1/1‑15 (MQ=255) tCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATg < 1:346477/150‑1 (MQ=255) ccACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgcccttgttccgcacaccccgctgcagctagcggttggaatcgtgttcgc < 1:131280‑M2/150‑115 (MQ=255) cacaGGAtaggcgccgggcttgaatctggtgccattcatgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgcccttgttccgcacagcccgctgcagctcgcggttggaatcgcgttcgcg > 2:92088‑M1/1‑7 (MQ=255) acaGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgcccttgt > 1:355913‑M2/1‑34 (MQ=255) acaGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgcccttgt < 2:355913‑M2/106‑73 (MQ=255) caGGAATGGCACCAGATTCAAGCCCGGACCCACGACTCGGGGAGCGAGCGTGCCCTACAGGCGGCCGGTACTGACCGAGATCGGAAGAGCACCCGTCTCGCCTCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGCGAGCCGCATgcagca > 1:323607/1‑150 (MQ=255) aGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCAc < 1:421347/150‑1 (MQ=255) | GCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCAC > NC_002947/5382353‑5382626 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |