New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2100027 =	13 (0.800)	6 (0.400)	5/238	NT	30.7%	intergenic (‑95/‑110)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
	?	NC_002947	2100074 =	15 (1.000)					intergenic (‑142/‑63)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein

AGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGC  >  NC_002947/2099928‑2100221                                                                                                                                                   |                                                                                                                                                    ggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcgcgcccctccgcgggcttgcccgtTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCgg                                                                                                                                                  >  2:202978‑M1/100‑150 (MQ=255)          cagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcgcgcccctccgcgggcttgcccgcTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCgg                                                                                                                                                  <  2:60740‑M1/51‑1 (MQ=255)          cagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcgcgcccctccgcgggcttgcccgcTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCgg                                                                                                                                                  >  1:60740‑M1/91‑141 (MQ=255)           aaTAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCGTAGCGCAAGCCCTGTGGGCGCGGGCAAGCCcgc                                                                                                                                        >  2:93620/1‑150 (MQ=255)                          tggtggGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGTGCTTGCCCGTTCCCAAAGATACAGCTTACCCCCAGGCTGATCGCAAGCCCTGTGGCAGCGGGCAGGCCCGCGGAGGGGCGCGCAGc                                                                                                                         <  1:71929/150‑1 (MQ=255)                                                     gATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCGGAACGCAAGCCCTTTGGGCGCGGGCAAACCCGCGGGGGGGCGCGCAGCGGCGCCCCAAAAACTGAAATTGtgatc                                                                                              >  1:443606/1‑146 (MQ=255)                                                                      cGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGAcgctc                                                                             >  1:187322/1‑150 (MQ=255)                                                                        ctgggCGCTCCTCCGCGGGCTTGCCCGGTCTCACGGGTACACCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCTGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGAcgctcgc                                                                           <  1:93620/147‑1 (MQ=255)                                                                                cccTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGc                                                                   >  2:83918/1‑150 (MQ=255)                                                                                 ccTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGAcgctcgc                                                                           >  1:34769/1‑141 (MQ=255)                                                                                 ccTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGAcgctcgc                                                                           <  2:34769/141‑1 (MQ=255)                                                                                   tCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCttt                                                                >  2:237182/1‑150 (MQ=255)                                                                                       cgGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTg                                                            <  1:237182/150‑1 (MQ=255)                                                                                          gCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTGGTGTTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGAc                                                         >  1:357489/1‑150 (MQ=255)                                                                                            ttGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACcg                                                       >  2:141727/1‑150 (MQ=255)                                                                                                ccgctcccacagggcttgcgttcagcctggggctaagctgtacctgtgggaGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTg                                                            >  1:60740‑M2/52‑141 (MQ=255)                                                                                                ccgctcccacagggcttgcgttcagcctggggctaagctgtacctgtgggaGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTg                                                            <  2:60740‑M2/90‑1 (MQ=255)                                                                                                ccgctcccacagggcttgcgttcagcctggggctaagctgtacctgtgggaACGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGcc                                                   >  2:202978‑M2/52‑150 (MQ=255)                                                                                                      CCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGa                                                                                             >  2:259165‑M1/1‑102 (MQ=255)                                                                                                      CCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGa                                                                                             <  1:259165‑M1/102‑1 (MQ=255)                                                                                                       CACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAg                                                                                               >  2:23944‑M1/1‑99 (MQ=255)                                                                                                       CACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAg                                                                                               <  1:23944‑M1/99‑1 (MQ=255)                                                                                                              cttgcgttcagcctggggctaagctgtacctgtgggaGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGAt                                                                      <  1:358521‑M2/80‑1 (MQ=255)                                                                                                              cttgcgttcagcctggggctaagctgtacctgtgggaGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGAt                                                                      >  2:358521‑M2/38‑117 (MQ=255)                                                                                                                tgcgttcagcctggggctaagctgtacctgtgggaACGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGgcgc                                   <  1:202978‑M2/115‑1 (MQ=255)                                                                                                                       ccccAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGa                            <  2:187322/150‑1 (MQ=255)                                                                                                                               tGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGt                    >  1:56639/1‑150 (MQ=255)                                                                                                                                gAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGtt                   >  2:78604/1‑150 (MQ=255)                                                                                                                                                 gaGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGc  >  2:297993‑M2/3‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                    AGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGC  >  NC_002947/2099928‑2100221

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.