New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3356367	11 (0.680)	4 (0.250)	4/250	NT	26.0%	coding (524/891 nt)	PP_2952	LysR family transcriptional regulator
	?	NC_002947	= 3356386	12 (0.760)					coding (505/891 nt)	PP_2952	LysR family transcriptional regulator

GTTCCCAGTTGCCACTTGTCGTAGACCCGCCCCTGCTGCATGTACAGCAGGCACTGGTGTTCGAGCAGATCTCCAGGCGCTTGGACGGTGCCTTGCCGCGCCAGGTACTCGGGCGAGGCCACCAGCACCTTGCGGTTCCAAGGTGCCAGTGGCAGGGCTATATAGTTGGCGTCGGCGTTCAGGCCATAGCGGATGGCGATATCTACCGGATCGCGAAAAAGATCGGCGATCTGGTCGGAGAGAAACAAGCGCAGGTTCAACTGTG  >  NC_002947/3356271‑3356535                                                                                                                    |                                                                                                                                                      gTTCCCAGTTGCCACTTGTCGTAGACCCGCCCCTGCTGCATGTACAGCAGGCACTGGTGTTCGAGCAGATCTCCAGGCGCTTGGACGGTGCCTTGCCGCGCCAGGTACTCGGGCGAGGCCACCAGCACCTTGCGGTTCCAAGGTGCCAGt                                                                                                                     <  2:412903/150‑1 (MQ=255) gTTCCCAGTTGCCACTTGTCGTAGACCCGCCCCTGCTGCATGTACAGCAGGCACTGGTGTTCGAGCAGATCTCCAGGCGCTTGGACGGTGCCTTGCCGCGCCAGGTACTCGGGCGAGGCCACCAGCACCTTGCGGTTCCAAGGTGCCAGt                                                                                                                     <  2:412801/150‑1 (MQ=255)  ttCCCAGTTGCCACTTGTCGTAGACCCGCCCCTGCTGCATGTACAGCAGGCACTGGTGTTCGAGCAGATCTCCAGGCGCTTGGACGGTGCCTTGCCGCGCCAGGTACTCGGGCGAGGCCACCAGCACCTTGCGGTTCCAAGGTGCCAGTg                                                                                                                    <  1:266384/150‑1 (MQ=255)     ccAGTTGCCACTTGTCGTAGACCCGCCCCTGCTGCATGTACAGCAGGCACTGGTGTTCGAGCAGATCTCCAGGCGATTGTACGGTGCCTTACCTCGCCAGGTACTCGGGCGAGGCCACCAGCACCTTGCGGTTCCAAGGTGCCAGTGGCa                                                                                                                 <  1:277233/150‑1 (MQ=255)      cAGTTGCCACTTGTCGTAGACCCGCCCCTGCTGCATGTACAGCAGGCACTGGTGTTCGAGCAGATCTCCAGGCGCTTGGACGGTGCCTTGCCGCGCCAGGTACTCGGGCGAGGCCACCAGCACCTTGCGGTTCCAAGGTGCCAGTGGCAg                                                                                                                >  1:219597/1‑150 (MQ=255)                  gTCGTAGACCCGCCCCTGCTGCATGTACAGCAGGCACTGGTGTTCGAGCAGATCTCCAGGCGCTTCGCCGGTGTTTTGCCGCGCCAGGTACTCGGGCGAGGCCACCAGCACACATTTTTTCCAAGGTGCCAGTGGCAGGGCTATATAGtt                                                                                                    <  1:35836/150‑1 (MQ=255)                     gTAGACCCGCCCCTGCTGCATGTACAGCAGGCACTGGTGTTCGAGCAGATCTCCAGGCGCTTGGACGGTGCCTTGCCGCGCCAGGTACTCGGGCGAGGCCACCAGCACCTTGCGGTTCCAAGGTGCCAGTGGCAGGGCTATATAGTTGGc                                                                                                 >  2:219539/1‑150 (MQ=255)                           ggtccccTGCTGCATGTACAGCAGGCACTGGTGTTCGAGCAGATCTCCAGGCGCTTGGACGGTGCCTTGCCGCGCCAGGTACTCGGGCGGGGCGACCGGCACCTTGCGGTTCCAAGGTTCCAGTTGCGGGGCTAGATAGTTGGCGTCggg                                                                                           >  1:398451/4‑149 (MQ=255)                                                                                 ttGGACGGTGCCTTGCCGCGCCAGGTACTCGGGCGAGGCCACCAGCACCTTGCGGTTCCAAGGTGCCAGTGGCAGGGCTATATAGTTGGCGTCGGCGTTCAGGCCATAGCGGATGGCGATATCTACCGGATCGCGAAAAAGATCGGCGAt                                     >  1:113511/1‑150 (MQ=255)                                                                                       ggTGCCTTGCCGCGCCAGGTACTCGGGCGAGGCCACCAGCACCTTGCGGTTCCAAGGTGCCAGTGGCAGGGCTATATAGTTGGCGTCGGCGTTCAGGCCATAGCGGATGGCGATATCTACCGGATCGCGAAAAAGATCGGCGATCTGGTc                               <  2:113511/150‑1 (MQ=255)                                                                                         tGCCTTGCCGCGCCAGGTACTCGGGCGAGGCCACCAGCACGTTGCGGTTCCAAGGTGCGAGTGGCAGGGCTATATAGTTTGCGTCGGGGTTCAGGCCATAGCGGTTGGCGATATCTACCGGATCGCGAAAAAGATGGGCGATCTGGTCgg                             >  2:159532/1‑150 (MQ=37)                                                                                           ccTTGCCGCGCCAGGTACTCGGGCGAggcaaggcaccgtccaagcgcctggagatctgctcgaacaccagtgcctgctgtacatgcagcaggggcgggtctac                                                                          >  1:363207‑M2/1‑26 (MQ=255)                                                                                           ccTTGCCGCGCCAGGTACTCGGGCGAggcaaggcaccgtccaagcgcctggagatctgctcgaacaccagtgcctgctgtacatgcagcaggggcgggtctac                                                                          <  2:363207‑M2/103‑78 (MQ=255)                                                                                            cTTGCCGCGCCAGGTACTCGGGCGAggcaaggcaccgtccaagcgcctggagatctgctcgaacaccagtgcctgctgtacatgc                                                                                           <  2:23937‑M2/85‑61 (MQ=255)                                                                                            cTTGCCGCGCCAGGTACTCGGGCGAggcaaggcaccgtccaagcgcctggagatctgctcgaacaccagtgcctgctgtacatgc                                                                                           >  1:23937‑M2/1‑25 (MQ=255)                                                                                                            cTCGGGCGAGGCCACCAGCACCTTGCGGTTCCAAGGTGCCAGTGGCAGGGCTATATAGTTGGCGTCGGCGTTCAGGCCATAGCGGATGGCGATATCTACCGGATCGCGAAAACGATCGGCGATCTGGTCGGAGAGAAACAAGCGCAGGtt          <  2:398451/150‑1 (MQ=255)                                                                                                                    aGGCCACCAGCACCTTGCGGTTCCAAGGTGCCAGTGGCAGGGCTATATAGTTGGCGTCGGCGTTCAGGCCATAGCGGATGGCGATATCTACCGGATCGCGAAAAAGATCGGCGATCTGGTCGGAGAGAAACAAGCGCAGGTTCAACtgtg  <  1:219539/150‑1 (MQ=255)                                                                                                                    |                                                                                                                                                      GTTCCCAGTTGCCACTTGTCGTAGACCCGCCCCTGCTGCATGTACAGCAGGCACTGGTGTTCGAGCAGATCTCCAGGCGCTTGGACGGTGCCTTGCCGCGCCAGGTACTCGGGCGAGGCCACCAGCACCTTGCGGTTCCAAGGTGCCAGTGGCAGGGCTATATAGTTGGCGTCGGCGTTCAGGCCATAGCGGATGGCGATATCTACCGGATCGCGAAAAAGATCGGCGATCTGGTCGGAGAGAAACAAGCGCAGGTTCAACTGTG  >  NC_002947/3356271‑3356535

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.