New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3952497 =	16 (0.990)	3 (0.200)	3/242	NT	18.1%	coding (97/657 nt)	PP_3488	Sco1/SenC family protein
	?	NC_002947	3952532 =	12 (0.780)					coding (62/657 nt)	PP_3488	Sco1/SenC family protein

CACCCACCAGGTCTTTCTCCAGGCGTACCGGCATGCCGTCCTGGTTCAGCAGCGACACATCGGCAAAACGCACACTGGTCTTTTCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTGCAGCAGCCGGCAGAACGC  >  NC_002947/3952386‑3952648                                                                                                                                                   |                                                                                                                     tgccggctgctgcaaccaacgcttcccagactgacgtgaggaatgtgcgatgaacgccaagcctgcttgcacactgttggccctgagcctggcattcgccagccacctggcCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCa                                                                                                                   >  2:118741‑M1/112‑150 (MQ=255)     caccaGGTCTTTCTCCAGGCGTACCGGCATGCCGTCCTGGTTCAGCAGCGACACATCGGCAAAACGCACACTGGTCTTTTCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGtg                                                                                                               >  2:151367/1‑150 (MQ=255)              tttCTGCAGGCGTACCGGCATGCTGTCTTGGTTCAGCAGCGACACATCGGCAAAACGCACACTGGTGTTTTCCTGGTGCGCAGCGGGGGGCTGCCCTGCATGGCCGGCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGaa                                                                                                      >  2:213680/1‑150 (MQ=255)                                          tGGTTCAGCAGCGACACATCGGCAAAACGCACACTGGTCTTTTCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCaa                                                                          <  1:338276/150‑1 (MQ=255)                                                     cGACACATCGGCAAAACGCACACTGGTCTTTTCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGc                                                               <  2:406221/150‑1 (MQ=255)                                                           aTCGGCAAAACGCACACTGGTCTTTTCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTcct                                                         >  2:223820/1‑148 (MQ=255)                                                                        acacTGGTCTTTTCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCa                                            <  1:151367/150‑1 (MQ=255)                                                                            tGGTCTTTTCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTg                                                                 <  1:216572/125‑1 (MQ=255)                                                                            tGGTCTTTTCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTg                                                                 >  2:216572/1‑125 (MQ=255)                                                                                 ttttCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCt                                   >  2:127604/1‑150 (MQ=255)                                                                                                  cgGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTgca                  <  2:109946/150‑1 (MQ=255)                                                                                                   gggggCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTgcag                 <  1:19956/150‑1 (MQ=255)                                                                                                            tggccatggcccacgccggtcacgcgcatgacggccatgGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTGCAGCAGCCGGCa        >  2:118741‑M2/40‑150 (MQ=255)                                                                                                               gCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTGCAGCAGCCGGCAGaa     <  1:213680/150‑1 (MQ=255)                                                                                                                  TGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTGCAGCAGCCGGCAGAAcgc  <  1:72583‑M1/150‑1 (MQ=255)                                                                                                                    gcccacgccggtcacgcgcatgacggccatgGCCAGGTGGCTGGCGAATGcc                                                                                                  >  1:302153‑M2/32‑52 (MQ=255)                                                                                                                    gcccacgccggtcacgcgcatgacggccatgGCCAGGTGGCTGGCGAATGcc                                                                                                  <  2:302153‑M2/21‑1 (MQ=255)                                                                                                                    GCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTgc                   <  1:312886‑M1/131‑1 (MQ=255)                                                                                                                    GCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTgc                   >  2:312886‑M1/1‑131 (MQ=255)                                                                                                                                                   |                                                                                                                     CACCCACCAGGTCTTTCTCCAGGCGTACCGGCATGCCGTCCTGGTTCAGCAGCGACACATCGGCAAAACGCACACTGGTCTTTTCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTGCAGCAGCCGGCAGAACGC  >  NC_002947/3952386‑3952648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.